Gene
RNA
| Item | Value |
|---|---|
| gene id | G347821 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 642986 ~ 643487 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU412100 | True | 374 | lncRNA | 0.48 | 2 | 642986 | 643487 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113528517 | LOC108255548 | coding | downstream | 65550 | 523807 ~ 577436 (-) |
| LOC113528156 | LOC108255548 | coding | downstream | 126714 | 475494 ~ 516272 (-) |
| atp8b5a | LOC108255417 | coding | downstream | 173033 | 440336 ~ 469953 (-) |
| lrp13 | LOC108255551 | coding | downstream | 257586 | 373450 ~ 385400 (-) |
| adamts12 | adamts12 | coding | downstream | 360580 | 261639 ~ 282406 (-) |
| pgam5 | pgam5 | coding | upstream | 9502 | 652989 ~ 658898 (-) |
| LOC113528030 | LOC108255642 | coding | upstream | 194074 | 837561 ~ 844476 (-) |
| tal2 | LOC108255450 | coding | upstream | 205899 | 849386 ~ 851691 (-) |
| LOC113524993 | NA | coding | upstream | 283622 | 927109 ~ 1240090 (-) |
| foxn4 | foxn4,LOC107654613 | coding | upstream | 333461 | 976948 ~ 980689 (-) |
| G347759 | NA | non-coding | downstream | 4706 | 634759 ~ 638280 (-) |
| G347753 | NA | non-coding | downstream | 23424 | 527948 ~ 619562 (-) |
| G347723 | NA | non-coding | downstream | 245536 | 395367 ~ 397450 (-) |
| G347672 | NA | non-coding | downstream | 287646 | 354327 ~ 355340 (-) |
| G347704 | NA | non-coding | downstream | 309231 | 333242 ~ 333755 (-) |
| G347833 | NA | non-coding | upstream | 29590 | 673077 ~ 676630 (-) |
| G347847 | ier3 | non-coding | upstream | 65067 | 708554 ~ 715445 (-) |
| G347859 | NA | non-coding | upstream | 99330 | 742817 ~ 746935 (-) |
| G347864 | NA | non-coding | upstream | 113546 | 757033 ~ 757336 (-) |
| G347866 | NA | non-coding | upstream | 119836 | 763323 ~ 765368 (-) |
| rusc2 | rusc2,LOC108255549 | other | downstream | 176731 | 418307 ~ 466255 (-) |
| LOC113528009 | atp5i,atp5ib,atp5ia,LOC107703581 | other | downstream | 275247 | 364006 ~ 367739 (-) |
| LOC117595925 | NA | other | downstream | 405714 | 230525 ~ 237272 (-) |
| LOC113528266 | NA | other | downstream | 432281 | 205480 ~ 210705 (-) |
| LOC117595911 | LOC108255570 | other | downstream | 440996 | 192549 ~ 201990 (-) |
| LOC113527995 | LOC108255428 | other | upstream | 213293 | 856780 ~ 924667 (-) |
| G347896 | LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 | other | upstream | 275897 | 919384 ~ 1701550 (-) |
| G347960 | NA | other | upstream | 433246 | 1076733 ~ 1079139 (-) |
| LOC113524981 | LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 | other | upstream | 624822 | 1268309 ~ 1278867 (-) |
| LOC113524988 | NA | other | upstream | 713081 | 1356568 ~ 1369462 (-) |
