G347833


Basic Information

Item Value
gene id G347833
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 673077 ~ 676630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412114
TGATGAGTTTAagagtttacttttttaaaatatagtttgGTGGAAAATGAAGTCACAACATTCACTTTTCCTCAGATGTAACCGCTCAGCAAGGGCAGGTTTGGTGTGTGAAGTTCGTTCATTTTCTCGCTGGAGCTACCAGGCTAAAGTCTCCTTCTCCCAAACGtttaaatacacatacattGTAAAGCTAATtagtttaaataaagtatttaatgAAATAGCAGTGAGAGTCCATTTTAAAAAGAGGGTGGAGCCTAGAATGACCCTGAAAGTCGGGATCACTTTGGCGCTGGAGTGGTACATTCTGCCCTTTAGTTAGAGGAACATCATTAAAGGTAGTGGTACAATTTGACCTTCAGAGTCCTTGATGTACTTTTAGGTCACTCATGGTCTTTTTCTTCATCTCCATCTGTCCACTTTCAGTGATCCCGTGCCCACtgtagcatcagattcctgttcctggctgacaggagaggaacctgatgtggtctcctgctgttgtagctcatccgcctTAAGGTTCgtcgttctgagatgcttttctgctcagcacagttgtaaagagtggttatttcccgtcagctcaaactagtctggCCATACTCTTCATCAACAATGCGTTTCCGCCAACAGAACTGATGTTCAcgtgatgttttttgtttttcgtaccTTTCtgtttagagactgttgtgtgtgaaaatcccaggagctcagcagtttctgaaatactcaaactcacaccaacagccatgccacggtcacagtcactgagatcgCCGAGATCACGGAGAtcttccccccattctgatgttcgatgtgaacattaacggAAGCTCTTgtcctgcatctgcatgatgttaTACACTGCACAGCTGCCTGGTGATCGGCTGATTGGACAACTGCATGAACcagcaggtgtgcaggtgttcctgcTTTTCTAAtgtggctgatcagtgtatataaataactagtttaaagcattttgtgttttgtgttgtttgtcaGCCCAAATCTCCAGCACTACgactctgtcctttggctcagtttagcagctcgcaaaacatctacaaaaaacccacaacgCGCgacatgtttgattcacttcctgcagtgagtCAATTCAGAGTCGAAAGTAGAACGAGACCACGTCGCTCAGATGCTCTCAGACCTGAGTATCTTGACCGAGCAGTCGTGCGATGATGAAGCGACGAGCGCAGGCGAGCCGATGCTCGGGGGGAGGAACACGCAGCACGCCGTCGTCTGAACATGTCCTCTGTATTCCACCACCTTACAGCCTGGCTGTCTGAGGTcccacagctacacacacacacacacacacacacacacacacacacacacacacacttacagagtGATcggatacacacacaggcatcaGCAGTCCCAGCTGTTCAGTAGTAATCAGATAGATACACAagcatgtaacacacacacctcacacacacacacacacacacatacatacacacacactgaccgtGGCCTCACAGCCGTGACCCCCGAAGCCGTTGCTGCAGGACAGTAGGTGGTAGCGGTTCACACTCACGTCACAGTGAGTCTGGATGTACTGCTTAGCTGGAAACGTGTTCGTCACCTGCCATGTCCGACTGTcccacactctgtaacacacacacacacacacacacagacacacacacacacacacacacacagacacacctatCCTACATTACACAGGAAATCTACAACGTTCATTTCCTGCCACTGAATCTGATTATTATGTGATTATGTGTCATGAACATctgataaaattaaaatgaaaatgacttttttttgacTTCACATTTGGTTTGTGATTAAACTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412114 True 1852 lncRNA 0.46 2 673077 676630

Neighbor

gene id symbol gene type direction distance location
pgam5 pgam5 coding downstream 14179 652989 ~ 658898 (-)
LOC113528517 LOC108255548 coding downstream 95641 523807 ~ 577436 (-)
LOC113528156 LOC108255548 coding downstream 156805 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 203124 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 287677 373450 ~ 385400 (-)
LOC113528030 LOC108255642 coding upstream 160931 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 172756 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 250479 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 300318 976948 ~ 980689 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding upstream 329010 1005640 ~ 1009594 (-)
G347821 NA non-coding downstream 29590 642986 ~ 643487 (-)
G347759 NA non-coding downstream 34797 634759 ~ 638280 (-)
G347753 NA non-coding downstream 53515 527948 ~ 619562 (-)
G347723 NA non-coding downstream 275627 395367 ~ 397450 (-)
G347672 NA non-coding downstream 317737 354327 ~ 355340 (-)
G347847 ier3 non-coding upstream 31924 708554 ~ 715445 (-)
G347859 NA non-coding upstream 66187 742817 ~ 746935 (-)
G347864 NA non-coding upstream 80403 757033 ~ 757336 (-)
G347866 NA non-coding upstream 86693 763323 ~ 765368 (-)
G347868 NA non-coding upstream 89435 766065 ~ 766596 (-)
rusc2 rusc2,LOC108255549 other downstream 206822 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 305338 364006 ~ 367739 (-)
LOC117595925 NA other downstream 435805 230525 ~ 237272 (-)
LOC113528266 NA other downstream 462372 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 471087 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 180150 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 242754 919384 ~ 1701550 (-)
G347960 NA other upstream 400103 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 591679 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 679938 1356568 ~ 1369462 (-)

Expression


Co-expression Network