G347868


Basic Information

Item Value
gene id G347868
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 766065 ~ 766596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412178
GacctaataaacactgtaatggagctgtagtACATCACACAggcctaataaacactgtaatggagctgtagtatatcacacaggtctaataaacactgtaatggagctgtagtACATCACACAggcctaataaacactgtaatggagctgtagtatatcacacaggtctaataaacactgtaatggagctgtaCTATATCACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412178 True 204 lncRNA 0.39 2 766065 766596

Neighbor

gene id symbol gene type direction distance location
pgam5 pgam5 coding downstream 107167 652989 ~ 658898 (-)
LOC113528517 LOC108255548 coding downstream 188629 523807 ~ 577436 (-)
LOC113528156 LOC108255548 coding downstream 249793 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 296112 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 380665 373450 ~ 385400 (-)
LOC113528030 LOC108255642 coding upstream 70965 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 82790 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 160513 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 210352 976948 ~ 980689 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding upstream 239044 1005640 ~ 1009594 (-)
G347866 NA non-coding downstream 697 763323 ~ 765368 (-)
G347864 NA non-coding downstream 8729 757033 ~ 757336 (-)
G347859 NA non-coding downstream 19130 742817 ~ 746935 (-)
G347847 ier3 non-coding downstream 50620 708554 ~ 715445 (-)
G347833 NA non-coding downstream 89435 673077 ~ 676630 (-)
G347773 NA non-coding upstream 43985 810581 ~ 852436 (-)
LOC117595935 NA non-coding upstream 60068 826664 ~ 829841 (-)
LOC117595934 NA non-coding upstream 64214 830810 ~ 837338 (-)
G347758 NA non-coding upstream 64387 830983 ~ 832930 (-)
G347955 NA non-coding upstream 269943 1036539 ~ 1038197 (-)
rusc2 rusc2,LOC108255549 other downstream 299810 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 398326 364006 ~ 367739 (-)
LOC117595925 NA other downstream 528793 230525 ~ 237272 (-)
LOC113528266 NA other downstream 555360 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 564075 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 90184 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 152788 919384 ~ 1701550 (-)
G347960 NA other upstream 310137 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 501713 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 589972 1356568 ~ 1369462 (-)

Expression


Co-expression Network