G347905 (LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573)


Basic Information

Item Value
gene id G347905
gene name LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1763211 ~ 1766929 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412259
AATCACGCAGGTGTAGTTGTGTTTCTGCAGCTCCTCAGCTGGAACTGTCAGAATGCTTCTCTTCTGGAAGCTTCCATCCTGGTTGGGTAACGTCTCTCTGAGCTCCACGTTCTCATGCACCTCCTCTCCGTCCTTCTGCCAGGAGATCATCACTGCTTTGGGGAAGAAACCTGTAGCATGACACACCACCTCTGCAGAAAGCGAGTGTTTCTGGAACACTGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412259 True 224 lncRNA 0.52 2 1763211 1766929

Neighbor

gene id symbol gene type direction distance location
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 204687 1535595 ~ 1558524 (-)
LOC113528310 NA coding downstream 321019 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 331730 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 342505 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 446824 1314499 ~ 1316387 (-)
fam151b fam151b coding upstream 119723 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 125339 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 134230 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 184700 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 390057 2156986 ~ 2163920 (-)
G347900 LOC108255575,LOC108255576,LOC108255573,LOC108255614 non-coding downstream 20911 1734913 ~ 1742300 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding downstream 125077 1632191 ~ 1638134 (-)
LOC117595968 NA non-coding downstream 157509 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding downstream 164669 1598470 ~ 1598542 (-)
G347916 LOC108255589,LOC108255412 non-coding downstream 266340 1496410 ~ 1496871 (-)
G348088 LOC108255559 non-coding upstream 18096 1785025 ~ 1866074 (-)
G348092 NA non-coding upstream 23188 1790117 ~ 1871146 (-)
G348094 NA non-coding upstream 27901 1794830 ~ 1875756 (-)
G348103 NA non-coding upstream 39067 1805996 ~ 1942711 (-)
G348143 NA non-coding upstream 219254 1986183 ~ 1987047 (-)
LOC117595719 NA other downstream 52303 1450335 ~ 1710908 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other downstream 61661 919384 ~ 1701550 (-)
G348096 LOC108255538 other upstream 60969 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 215125 1982054 ~ 2127645 (-)
G348145 NA other upstream 228973 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 412610 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 834605 2601534 ~ 2664482 (-)

Expression


Co-expression Network