G347916 (LOC108255589,LOC108255412)


Basic Information

Item Value
gene id G347916
gene name LOC108255589,LOC108255412
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1496410 ~ 1496871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412270
AGTTTAGAACATCAGCTCCATTACAACCGTGTTACTTctttactgaaagtgagagaaTAGTGATGTCTGTTCATGGCAAGAACACGTCTCTCACAATCACTGCAGTAAATGTCTCTGATACAGGACTGTATTACTGCAGCTTCAGTGATAAAATGATCTTTAGCAACTCGACGTCTTTACAAGTGAAAGagggaaataaaacactttccagGAACTCAGAAAGAGCaagCTTGTGTCTCTTCTGCTGTGTTCTTCATGCTGACTGTGGTGTTTGGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412270 True 278 lncRNA 0.41 3 1496410 1496871

Neighbor

gene id symbol gene type direction distance location
LOC113528310 NA coding downstream 54218 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 64929 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 75704 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 180023 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 198602 1293874 ~ 1297808 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 38724 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 389781 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 395397 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 404288 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 454758 1951629 ~ 1968139 (-)
G347959 NA non-coding downstream 31929 1069718 ~ 1464481 (-)
G348012 NA non-coding downstream 32778 1408961 ~ 1463632 (-)
G348011 NA non-coding downstream 93579 1401856 ~ 1402831 (-)
LOC113524984 NA non-coding downstream 156569 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 161473 1227126 ~ 1334937 (-)
LOC117595968 NA non-coding upstream 85849 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 101599 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 135320 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 196272 1693143 ~ 1795534 (-)
G348079 NA non-coding upstream 237035 1733906 ~ 1859612 (-)
LOC113524988 NA other downstream 126948 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 217543 1268309 ~ 1278867 (-)
G347960 NA other downstream 417271 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 571743 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 1030155 418307 ~ 466255 (-)
LOC113542373 NA other upstream 8768 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 331027 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 485183 1982054 ~ 2127645 (-)
G348145 NA other upstream 499031 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 682668 2179539 ~ 2231567 (-)

Expression


Co-expression Network