G347955


Basic Information

Item Value
gene id G347955
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1036539 ~ 1038197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412317
atttcttttcttattgttaTGTGCTGGATAGTTTGCCCTCCCTCATCCTACTGTGAGGAATAAACTCTGTCTGCACTCACTCCTGCCCCAGAGCCTCCTACGATCTGAAATAGCTGATTCCAGCAGCAGTGAGGCGGATTCCTCTCCCATTACAGCCACAAGCTACTGAGCATTTATTaaccagcaacaacaacaacaataataataataataataataataataatagtgtgtatttgtgttttacaGAGTAATAGATGTAATTTTTTAGCTTTATTGactttattatttgtgtgtaacTTTGTCAGATCTCCCCTTATCACAGGCTCAGCGTTAAACTTTAATATTAGAGagtaaataaatggaataaagaCAGTAAACATTACAGAACTCACCTGCTGatgaaagatgaagagaaaCTGTGAGGAAAATCAGAGCTTTCAGAACTGCACGAGCCatctctcactgcacactctcacactataaacactataacacactataaacactataaacacactaacaaaataataataataaaagattaacTCTATTTAACTCTCTTTAGCGCTGTGTAACTCGGTGAGAGAGAGTTAAAGATCCGGCTGTCGCTCCTGTCTTCAGCGGGAATGTGTCTCCTGTGAGGGGGGAGGAGTTTTTATATCAGCgctctgaccaatcacaactCAGAGTCCCGACCAATAAGAACTCAGGATTCAGTCGCGTCACCAGTTTCTGAGGAGAACTGAGGAGTGCAGGATTATTCTG
>TU412318
TGGTTAAAGTGCTGCATCATTCTGGCCACACTGACTTTGAAGACCTCCTGTTGATCCTCCGCATACTGTGTCTCACTGCTCCAGTAATCTGGATCTGTAGCACTGCGCTTCTGTATCCACTCCGTCTTCGGGGTCACTCTCCTGATGTTACTGTCGTAGAACGCAAACTTCTCTCCATCCAACTGACCCACAGCAGTGAATTCTGGGAAATTTATTCCTGGTGTAACTCCAGTGAGGATGTGCTGcagagagtgtgtgactgtCTCTTTAGCGCTGTGTAACTCGGTGAGAGAGAGTTAAAGATCCGGCTGTCGCTCCTGTCTTCAGCGGGAATGTGTCTCCTGTGAGGGGGGAGGAGTTTTTATATCAGCgctctgaccaatcacaactCAGAGTCCCGACCAATAAGAACTCAGGATTCAGTCGCGTCACCAGTTTCTGAGGAGAACTGAGGAGTGCAGGATTATTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412317 True 768 lncRNA 0.39 2 1036539 1037332
TU412318 False 471 lncRNA 0.50 2 1036539 1038197

Neighbor

gene id symbol gene type direction distance location
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding downstream 26945 1005640 ~ 1009594 (-)
foxn4 foxn4,LOC107654613 coding downstream 55850 976948 ~ 980689 (-)
tal2 LOC108255450 coding downstream 184848 849386 ~ 851691 (-)
LOC113528030 LOC108255642 coding downstream 192063 837561 ~ 844476 (-)
pgam5 pgam5 coding downstream 377641 652989 ~ 658898 (-)
LOC117595672 mmab coding upstream 48145 1086342 ~ 1108648 (-)
tchp tchp coding upstream 150727 1188924 ~ 1230648 (-)
LOC117595980 NA coding upstream 198674 1236871 ~ 1240049 (-)
LOC117595953 mvk coding upstream 213673 1251870 ~ 1257942 (-)
LOC117595981 NA coding upstream 255677 1293874 ~ 1297808 (-)
G347773 NA non-coding downstream 184103 810581 ~ 852436 (-)
LOC117595934 NA non-coding downstream 199201 830810 ~ 837338 (-)
G347758 NA non-coding downstream 203609 830983 ~ 832930 (-)
LOC117595935 NA non-coding downstream 206698 826664 ~ 829841 (-)
G347868 NA non-coding downstream 269943 766065 ~ 766596 (-)
G347959 NA non-coding upstream 31521 1069718 ~ 1464481 (-)
G347963 NA non-coding upstream 45555 1083752 ~ 1102884 (-)
G347969 NA non-coding upstream 56837 1095034 ~ 1277213 (-)
G347980 fam222a non-coding upstream 135920 1174117 ~ 1177170 (-)
G348001 NA non-coding upstream 188929 1227126 ~ 1334937 (-)
LOC113527995 LOC108255428 other downstream 111872 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 570284 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 668800 364006 ~ 367739 (-)
LOC117595925 NA other downstream 799267 230525 ~ 237272 (-)
LOC113528266 NA other downstream 825834 205480 ~ 210705 (-)
G347960 NA other upstream 38536 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 230112 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 318371 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 412138 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 467442 1505639 ~ 1530394 (-)

Expression


Co-expression Network