G347959


Basic Information

Item Value
gene id G347959
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1069718 ~ 1464481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412322
GttggacagaaaaatatatttacatatttaataatacacacataaaatctctaaatgtgtagtttttaaagaataaagtcatttttcatgtcgatatttaaatatgaaaaccaCAGgacagaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacagtaacagAGCAGATCACACACTTTACCTTTCCTCTCCAGAGTCTCTCTGCCGTAAGACACGTACTTCTTTAACCACTCGATACAGATGTTCTCCAGGTAGATCTTCTGGCCCTCAGTCACACCAGGATTATTATCCCACTTGTGTTTGCTGATCACAGCTTGAGGTGTCGGAGCGATCCAGGTTTTAGTTTTCAGATCAAAACTGATGAAATCTTCTCCATCATAACCGAACTGACTGTATCCTCTAGTGGTGCCGTCATCATCGAGCTCACAGCCGTACATCATCTGCCATGTGTgaactcctgcacacacacacacacacacacacacacacacacagatgagagtGATGAGGTTCAGCTGAGCTCCGTCTCCTTCTACACTCTCCATTCAAACATCACACTACACTTTACTCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412322 True 585 lncRNA 0.42 2 1069718 1464481

Neighbor

gene id symbol gene type direction distance location
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding downstream 60124 1005640 ~ 1009594 (-)
foxn4 foxn4,LOC107654613 coding downstream 89029 976948 ~ 980689 (-)
tal2 LOC108255450 coding downstream 218027 849386 ~ 851691 (-)
LOC113528030 LOC108255642 coding downstream 225242 837561 ~ 844476 (-)
pgam5 pgam5 coding downstream 410820 652989 ~ 658898 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 71114 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 422171 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 427787 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 436678 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 487148 1951629 ~ 1968139 (-)
G347955 NA non-coding downstream 31521 1036539 ~ 1038197 (-)
G347773 NA non-coding downstream 217282 810581 ~ 852436 (-)
LOC117595934 NA non-coding downstream 232380 830810 ~ 837338 (-)
G347758 NA non-coding downstream 236788 830983 ~ 832930 (-)
LOC117595935 NA non-coding downstream 239877 826664 ~ 829841 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 31929 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 118239 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 133989 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 167710 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 228662 1693143 ~ 1795534 (-)
LOC113527995 LOC108255428 other downstream 145051 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 603463 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 701979 364006 ~ 367739 (-)
LOC117595925 NA other downstream 832446 230525 ~ 237272 (-)
LOC113528266 NA other downstream 859013 205480 ~ 210705 (-)
LOC113542373 NA other upstream 41158 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 363417 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 517573 1982054 ~ 2127645 (-)
G348145 NA other upstream 531421 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 715058 2179539 ~ 2231567 (-)

Expression


Co-expression Network