G347980 (fam222a)


Basic Information

Item Value
gene id G347980
gene name fam222a
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1174117 ~ 1177170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412347
CCATATAGTCTCTGATACGAGCGCTTCAACTGTTAAACCATTTCGGTTTTcagaatttcaaataaaaacataatcacACAAGTCAAGGCATGgggttttaaataaattctcaaaatccatttatttatttttttgcacctCAAAACAGATAGGGAATGAGTATATAGAACAGCAGGAATGTACCAGAATCAcaaaggaattttttttcttttttttttgttttggtttgagctcagaaaaagcaaataaaattacCCTTCATACAGTCATAATAATTGCACTTCATAAATCTAGACTGCTTTTTGCCTCTGGCAGAAATccaaacattctctctctctctctctctctctgtctctctctctccacagtttAAGAATTCAATTTTCCAATAAAACCtgactgaaaaaagaaatgctaaTTCAGCGCAGAGGACCATGGCATCAATCcaatttctcttcttctttttctctttttttttttgcttttcacattGGTCCTTTCAGTCGGATAAGTGCAgcacattcacagggacttcacAGCTGGAATGAACGTTTCAGTGTTACAGGCAgcgagacagaatgagagagagagagagagagagagagagagaataaaaatcaaacaaagatggaaaaagatAGCGAGAGAGCACTCCATACCTTCTCTCTCCATCAGAGACAGAAATCAAGACTTGGAGAAAAATGATTGTTTCATCACTCCCAAAAAGATAAATGAACGAGTGTTGGATTTACCATTTCTCTCCTTCCTGCAGTCCTGCTTCAGACAGGGTCATGTGACCAAGCAATTTGCTTTTACATGACCcattagcattatttagcaATGGGAAATTAGCAGAACCTACAAAGATCCAAACATCATTCATAGAGAGTCGAATTTCCTAAAACCTGAACACTAAATCGTCTGCTCTGATTCTGTCAGAGTACACGTGTTTACCACGTGTAAGCAGATGGTTCTGTGCCGACTACcatgaactgttttatttaaaatgaatacaaactAAGCTACTCATTGGCTGAAAGCTGTAGAGATGATGACAAGTGTATTAACACTGTGTTAGGagtgtcaaataaaaaaaaaaaaaaagaaagaaaatatgagTCAACTGGATATTTAGAAAGGTTTTGATTACAAAAATATGAGTTAATGGATTCTTCCTGAATAATATGTATGAAATGGTGAAAATTggcatttatttttgatgaaataaaaacagttcttggtcGTGGACTTTCATGAATAACCATGAATTACACCACCCAGACAgcctaaaacaaaaaaactcaaactTCAAACCACAGTGGGAATAAACCAGGACCTTCTATTATGACATCGACTGTATCATGGCCACCTTTCAAACCTTCAGTGGATTCCAGTGTTAGTTCCTCATGAATCAAAAGCGTGATCAGACCTGATCAGAGTTACTAGATTTTagccaaaagaggaaaaacaatcaaatgcaaaacagaaataacTCATTAGGACCCATTAAAAAACTAAGACACATCTTTCTCCTTAGCAGCCAATACATCTCATATactacaaatatataaaacaacaaaaataaattcaagTTTTCAAGtttcataaatacattaaaCTCAAACTAATTGTTTCCAGCTTTTCAATCTTTTCGCAagattttacatttccaaaGCAGTGCAATTTTCAATTATAGCcataattatttttacagttaagttattttttttaaagtaatataaCGTAACAACACTCAAAAGCACTGATCCTACAGCATTTCCTTTGCAACATTTGATGTGGTCACCACTAGAACTGTGTGCGTTTACATTTTGAAGCTGTATTCTTCTTCACTGTATGAATCCACACACTTGGTTGAGCGAAGAAATTCATTTCCTGCTCATATATAGTGATTTTTATACCTACAGAATTTTGTCAGATAACAGAtaacatggaggaaaaaaattgaaaaatgaaaggaaagaaaaagtaaaaatccctgttggcaaaaaaaaacaacaactctcAAGCAGGATCTGACTTTCAATTTCCTCCCAGTCTTCAACCAATCACCATCCAGATCTTCCCACTCTgcttaaaaacaacacaaccaCAGAACTGACCCCAATCCACAAATCCATCTCCATTTTTGATTGAAAAGATCTCCATTTTCTGAAACCTTAGATCTGCGCTTCTATCTGTAAACTGGAAGTCGAATGTGCGCATGCTGATGATCCAGAAGTCGTGGTACTGAAATGGTTTCATAGCCTTTACCCAACATCTGCTCCTTAATACATGGAGGGTGGATGTCATTGATCAGGTATTCCAGCGACTGCAAACTGCTACTGAGAACAGAAGCATTGCACAAGCTTTTACTTGGAAAACCGCAGCAAATGCCTCCAGAGCTGTCTGTGGGTGCGTGtgggtgatgatggtggtagtgATGATGAAGGTGGTGATGCTGAGGCAGAAAGCCCAGCTCCTTCTGCCCAATGGTTGTTGTCCCTGGTGGCAACTCCTGAGGGTTGTAGCAGTCACTTTCTGGGGTGACCAGGACACTGTTCCATGGTGGGGCAAAATACTGCCCCAAAGCAAAATTCCCCTGTATGGCTGCACAGTTCAACGGTGAGGAGCTCAGTTTCTCGAGGCCACCTCCTCCGCTCACGCTCGTCATTATTGGGTACGTCCTGGAAGAACATGATGCCTGGGATCCACCTACTAGGATGCTTGGGCCACAAGATTCTGGCGACTTGCTAACCGCACCGCTTCCACCACTTCCACCACTGTACATCCTCAAAATggcttgctgctgctgttgctgcttcTGCCAAAGAATGTAATCCAAACTCTCTGAATATGCAGCCACCTTTGCTGCATCCCCATTCTGTCCCGGTAGTACCGTGCCAGAGTATCCCACGTTCCCTTGGGGTGCCAGATTTGCTGTATAACTCCCTCCTGAGATGGATGAAACCCCAAGTGCAGTGGTACCTTGCTTGCAAGGACTAGGATTGG

Function

symbol description
fam222a Is expressed in several structures, including margin; nervous system; neural tube; periderm; and tail bud. Orthologous to human FAM222A (family with sequence similarity 222 member A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412347 True 3009 lncRNA 0.39 2 1174117 1177170

Neighbor

gene id symbol gene type direction distance location
LOC117595672 mmab coding downstream 65469 1086342 ~ 1108648 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding downstream 164523 1005640 ~ 1009594 (-)
foxn4 foxn4,LOC107654613 coding downstream 193428 976948 ~ 980689 (-)
tal2 LOC108255450 coding downstream 322426 849386 ~ 851691 (-)
LOC113528030 LOC108255642 coding downstream 329641 837561 ~ 844476 (-)
tchp tchp coding upstream 11754 1188924 ~ 1230648 (-)
LOC117595980 NA coding upstream 59701 1236871 ~ 1240049 (-)
LOC117595953 mvk coding upstream 74700 1251870 ~ 1257942 (-)
LOC117595981 NA coding upstream 116704 1293874 ~ 1297808 (-)
LOC113528146 NA coding upstream 137329 1314499 ~ 1316387 (-)
G347963 NA non-coding downstream 71233 1083752 ~ 1102884 (-)
G347955 NA non-coding downstream 135920 1036539 ~ 1038197 (-)
G347773 NA non-coding downstream 321681 810581 ~ 852436 (-)
G348001 NA non-coding upstream 49956 1227126 ~ 1334937 (-)
G348003 NA non-coding upstream 54065 1231235 ~ 1231841 (-)
LOC117595969 NA non-coding upstream 87635 1264805 ~ 1284995 (-)
LOC117595965 NA non-coding upstream 132519 1309689 ~ 1311494 (-)
LOC113524984 NA non-coding upstream 161638 1338808 ~ 1339841 (-)
G347960 NA other downstream 94978 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 249450 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 707862 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 806378 364006 ~ 367739 (-)
LOC117595925 NA other downstream 936845 230525 ~ 237272 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 91139 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 179398 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 273165 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 328469 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 650728 1827898 ~ 1828645 (-)

Expression


Co-expression Network