G348001


Basic Information

Item Value
gene id G348001
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1227126 ~ 1334937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412370
cTTAATCCcataattatacaataaaaaaaaatcattgtgttgtttaaaaaaaaaaaggtgtcaaTATGAAGTGACTTCAGCTGATATGGACTTCCTCTCCTGTACAGGGATTGGAGTGGATTTGGACTCCTGGTCCTGTTCTGGTCCAGTCTTCTGTGTCCTGGTCCTGTTTTGGTCCGATCTAGATCTGTTCTGTTCCCAATCCATCTGTTACTGTGTTGTCTTTGTTTAAGTGCCCgttctgtctttatttattgatCATTGTGAATTTTGTCCTCCCTGTTGTGTAGCCATGATATAGTCCTGTCCTGCTCGGGTCCTGCTCTGGTCCTGCTCGGGTCCTGCTTTGGTCctgttctttctctgtgtgGCCATTAATGCTTTTGACCGTATTGTTGTGGCATCATGACTAGAGCTCATTTAGATTTTCACCCCAGTATATGTGGAGATAGGAGTGGATGTAGGAGTTTTACAGTGATTGaaataacaatttaaatttcattacagCTCTGTggttcagtccagttctagctTGAGTTGAAACTGTTTCTGTGCTTCAAGGGCTCCATCATCTCCACCACATGGTCTCTGGATCTGGAGCCTCTATTCAGCTCCACTACACGAGGAACCACCGTGGACCAGCGATCTGTaacacccacacagacagacataacATTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412370 True 680 lncRNA 0.43 2 1227126 1334937

Neighbor

gene id symbol gene type direction distance location
LOC117595672 mmab coding downstream 118478 1086342 ~ 1108648 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding downstream 217532 1005640 ~ 1009594 (-)
foxn4 foxn4,LOC107654613 coding downstream 246437 976948 ~ 980689 (-)
tal2 LOC108255450 coding downstream 375435 849386 ~ 851691 (-)
LOC113528030 LOC108255642 coding downstream 382650 837561 ~ 844476 (-)
LOC113524983 NA coding upstream 15379 1350316 ~ 1420706 (-)
LOC113524989 NA coding upstream 90162 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 98069 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 200658 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 551715 1886652 ~ 1892126 (-)
G347980 fam222a non-coding downstream 49956 1174117 ~ 1177170 (-)
G347963 NA non-coding downstream 124242 1083752 ~ 1102884 (-)
G347955 NA non-coding downstream 188929 1036539 ~ 1038197 (-)
LOC117595934 NA non-coding downstream 389788 830810 ~ 837338 (-)
G347758 NA non-coding downstream 394196 830983 ~ 832930 (-)
LOC113524984 NA non-coding upstream 3871 1338808 ~ 1339841 (-)
G348011 NA non-coding upstream 66919 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 74024 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 161473 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 247783 1582720 ~ 1605702 (-)
G347960 NA other downstream 147987 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 302459 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 760871 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 859387 364006 ~ 367739 (-)
LOC117595925 NA other downstream 989854 230525 ~ 237272 (-)
LOC113524988 NA other upstream 21631 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 115398 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 170702 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 492961 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 647117 1982054 ~ 2127645 (-)

Expression


Co-expression Network