LOC117595969


Basic Information

Item Value
gene id LOC117595969
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1264805 ~ 1284995 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412376
CTTTCTCGAGGCAGAACTCTCTAGCCAGCCTAAGgagggaagagtgtgtgtgatgaaaatGTTGGTACACTGCTATGATGATGAgatacagaaaaatgtgtgtgtgtgtgtgtgtgtgtttcaccCGATGGCAGACGAGAGCTCGTCCGTCGTACCCAAAGCTTCAAAAACACGATCCTCTTTCGGCCGCCTCTCTCCTGTGAACGTGCTGGAAAACCcttaaagaataaaatggaCATAAAACAGTCCCATTCTGAGGCTCAGTGTGAAATAATGCTGGTGTAAATGCTGAGGCTGAATGTGTTCATGTCCATGTACAAAGTGAGGACAGAGAAAAGAAGATAGAAGAATCGTGAAACCTTTATCTCCTGTTTTGGTGTAAATCTTGGGACTCGGCTGATCTCGCTCCGACTTTGTGCCAAAACTCAGAAAGGTGAGAAAATAAATTCAGAGGTTAGACACGGTTAATAAAACAGTCACAGTTCAGGACTGAAGCTTCTCTGTTCATCTccagaaggttatgagttcaaatcccagaaccgATACTGAGTCACTGTAGTGAAAACTGCTTTATAAGAACTGTTTCTTTTCTACTTCTACCTGCTAATCTTAAGGAAAC
>XR_004577150.1
TCCAGCACCAAAGTTTCCACATATCAGCACACACAGTTACGCTTGTGTGAGTGTGCTTACAGGCAGTATGAAGTGTGTAAGAGGAGGAAGCTCGTCTGTGTAGGAATCAATCCAGCTCTCCAGCTCTGCCACTGGCTCACTGCTGAACTGTGTCTTCTCTGGTGGAGAAGGAGAAAACACtgacaataacacactgtacatactTTCACTACTCAGACTGCATATTTCTCTtgctctccctcactctctctttcatacacacacacatatatatacacagatgcTGCAAATTGGATACACACTTATGTGGCTCTCTCGGGCTGATGAGCGAGGAGTGGCCATGTTGGAGCCCACGTCCTGCAGCACACACTGGATCTGGAAAAGGAAACGACAAAGCTGCTGTCAGTGGCACTCTTTATGttcaccCGATGGCAGACGAGAGCTCGTCCGTCGTACCCAAAGCTTCAAAAACACGATCCTCTTTCGGCCGCCTCTCTCCTGTGAACGTGCTGGAAAACCcttaaagaataaaatggaCATAAAACAGTCCCATTCTGAGGCTCAGTGTGAAATAATGCTGGTGTAAATGCTGAGGCTGAATGTGTTCATGTCCATGTACAAAGTGAGGACAGAGAAAAGAAGATAGAAGAATCGTGAAACCTTTATCTCCTGTTTTGGTGTAAATCTTGGGACTCGGCTGATCTCGCTCCGACTTTGTGCCAAAACTCAGAAAGGTGAGAAAATAAATTCAGAGGTTAGACACGGTTAATAAAACAGTCACAGTTCAGGACTGAAGCTTCTCTGTTCATCTccagaaggttatgagttcaaatcccagaaccgATACTGAGTCACTGTAGTGAAAACTGCTTTATAAGAACTGTTTCTTTTCTACTTCTACCTGCTAATCTTAAGGAAACGGGTCTGTAATTGCAAAATacctttttaaaatcaaaaatatGCAGATGTTGGAAGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412376 False 619 lncRNA 0.43 2 1264863 1284995
XR_004577150.1 True 978 lncRNA 0.44 2 1264805 1266121

Neighbor

gene id symbol gene type direction distance location
LOC117595953 mvk coding downstream 6863 1251870 ~ 1257942 (-)
LOC113524993 NA coding downstream 24715 927109 ~ 1240090 (-)
LOC117595980 NA coding downstream 24756 1236871 ~ 1240049 (-)
tchp tchp coding downstream 34157 1188924 ~ 1230648 (-)
LOC117595672 mmab coding downstream 156157 1086342 ~ 1108648 (-)
LOC117595981 NA coding upstream 8879 1293874 ~ 1297808 (-)
LOC113528146 NA coding upstream 29504 1314499 ~ 1316387 (-)
LOC113524983 NA coding upstream 65321 1350316 ~ 1420706 (-)
LOC113524989 NA coding upstream 140104 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 148011 1433006 ~ 1442192 (-)
G348003 NA non-coding downstream 32964 1231235 ~ 1231841 (-)
G347980 fam222a non-coding downstream 87635 1174117 ~ 1177170 (-)
G347963 NA non-coding downstream 161921 1083752 ~ 1102884 (-)
G347955 NA non-coding downstream 226608 1036539 ~ 1038197 (-)
LOC117595934 NA non-coding downstream 427467 830810 ~ 837338 (-)
LOC117595965 NA non-coding upstream 24694 1309689 ~ 1311494 (-)
LOC113524984 NA non-coding upstream 53813 1338808 ~ 1339841 (-)
G348011 NA non-coding upstream 116861 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 123966 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 211415 1496410 ~ 1496871 (-)
G347960 NA other downstream 185666 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 340138 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 798550 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 897066 364006 ~ 367739 (-)
LOC117595925 NA other downstream 1027533 230525 ~ 237272 (-)
LOC113524988 NA other upstream 71573 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 165340 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 220644 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 542903 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 697059 1982054 ~ 2127645 (-)

Expression


Co-expression Network