LOC113524988


Basic Information

Item Value
gene id LOC113524988
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1356568 ~ 1369462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412381
AAGTTTACACATTTCTCGTATAATGTGTGAATACCTCGAAAAAGCCTGAAATCTGCTGTGTGAAGCTGCTAACAGAATGATGGAACTCAGCTGACAGAAGTTTGAATGAGAAGTTTGTTCCCAGTGAAAGTTCCTCTACACTCCTGACTCTCCTGTGTGCTGGAGCTCTACACTGCTCTGACCCGCAGCTGGAACTGGACCGACCTGATGAAGAGCTTACTTTTATTTACAGCTTGCTTTCTTCACGTTTCTGCAGACACACAGTCCCTACAGTACTACTACACTGCACTCACACAAGGAATACATTTCCCAGAGTTCACTGCTGTTGGTCTGCTGAATGGAGAGCAGTTTATGTTCTACAGCAGCAGTAACAGGTTGCTGATCCCAAAGGATTGGGTAAAGAAGCCTGAGGATGAAACCTATTGGAAAAGTGAGACACAGGACATGCAGGGCCATCAGGATAGCTTTATCAGCAAATTCACAACAGtattaaatcagtttaatcaCAGTAAAGgagTTCATACATTACAGCGGATGTTTGGCTGtgagtgtgat
>XM_034299285.1
ATACCTCGAAAAAGCCTGAAATCTGCTGTGTGAAGCTGCTAACAGAATGATGGAACTCAGCTGACAGAAGTTTGAATGAGAAGTTTGTTCCCAGTGAAAGTTCCTCTACACTCCTGACTCTCCTGTGTGCTGGAGCTCTACACTGCTCTGACCCGCAGCTGGAACTGGACCGACCTGATGAAGAGCTTACTTTTATTTACAGCTTGCTTTCTTCACGTTTCTGCAGACACACAGTCCCTACAGTACTACTACACTGCACTCACACAAGGAATACATTTCCCAGAGTTCACTGCTGTTGGTCTGCTGAATGGAGAGCAGTTTATGTTCTACAGCAGCAGTAACAGGTTGCTGATCCCAAAGGATTGGGTAAAGAAGCCTGAGGATGAAACCTATTGGAAAAGTGAGACACAGGACATGCAGGGCCATCAGGATAGCTTTATCAGCAAATTCACAACAGtattaaatcagtttaatcaCAGTAAAGgagTTCATACATTACAGCGGATGTTTGGCTGTGAGCTCGATGATGATGGCAGAAGTAGAGGATACGATCAGTATGGTTATGATGGAGAAGATTTCATCAGTCTGAATCTGAAAACCAGAATATGGACTGCAGCTAAACCTCAAGCTGAGATCTTTATAAACGAGTGGGATCCTACAGGACATGAGGCTAAATACTGGAAAAGATACCTGGAGAATGACTGTACTGATAGGTTAAAGAAGTTTGTGTCTAATGGCAGAGAGACTCTAGAGAGGAAAGttcGTCCCGAGGCTTCAGTGCTCCAGAAACACTTGTCTTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGAAGGACGGAGAGGAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGGTGGAGCACCGATTGCTGTCATGGTTGCTGTAGTCGTTGCTCTCGTTGCTCtcgttgctgttgttgctggaATTGTGGtctggaagaagaagaactctgGcttcaaacctgttccagccaAAGCCGCCTTTGAAGGAGATTCTTCCTCCAACAACTCTTAaagtgtgactgtgtgtcttcctgctgaactgagagagtaagacatgatgatgtttacagtgtaatatggaataaaaatctgtgtgtggAGTGAAAATCCAGCAGAAAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU412381 False 555 TUCP 0.44 4 1356568 1369462
XM_034299285.1 True 1307 mRNA 0.46 7 1358558 1369432

Neighbor

gene id symbol gene type direction distance location
LOC113528146 NA coding downstream 40181 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 58760 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 98626 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 116519 1236871 ~ 1240049 (-)
tchp tchp coding downstream 125920 1188924 ~ 1230648 (-)
LOC113524989 NA coding upstream 55637 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 63544 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 166133 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 517190 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 522806 1892268 ~ 1900064 (-)
LOC113524984 NA non-coding downstream 16727 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 21631 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 45074 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 71573 1264805 ~ 1284995 (-)
G347969 NA non-coding downstream 79355 1095034 ~ 1277213 (-)
G348011 NA non-coding upstream 32394 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 39499 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 126948 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 213258 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 229008 1598470 ~ 1598542 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 77701 1268309 ~ 1278867 (-)
G347960 NA other downstream 277429 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 431901 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 890313 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 988829 364006 ~ 367739 (-)
LOC117595719 NA other upstream 80873 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 136177 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 458436 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 612592 1982054 ~ 2127645 (-)
G348145 NA other upstream 626440 1995902 ~ 1998470 (-)

Expression


Co-expression Network