G348011


Basic Information

Item Value
gene id G348011
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1401856 ~ 1402831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412383
ctctgataCACAGTGGTTTGGTTTGAAGCTCTGCATGTGTTTCTCCTTGTCATGGTGTTGCTGCTTTACCCAGATGCTGCCTTCTTCAAATTAAGACTAGAAATCAAGAGACTAATATTCTCTAAGAAGAAAACCAAGAGGAGACATGATGAAATGGAATATTCATATGTTGTATTTTCTTCTGTCAGTCAATAACGCAGCAGTGTCAGGGTAATGTGTGTACACGATgtcatacattatatattatttactgaccagtgacagatttatacatttatattgtcACTGTTACAGATATGATATTGTATAATTGCAGGAGCT

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection
ko05310 Asthma
ko05322 Systemic lupus erythematosus
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU412383 True 321 lncRNA 0.36 3 1401856 1402831

Neighbor

gene id symbol gene type direction distance location
LOC113528146 NA coding downstream 85469 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 104048 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 143914 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 161807 1236871 ~ 1240049 (-)
tchp tchp coding downstream 171208 1188924 ~ 1230648 (-)
LOC113524989 NA coding upstream 22268 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 30175 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 132764 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 483821 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 489437 1892268 ~ 1900064 (-)
LOC113524984 NA non-coding downstream 62015 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 66919 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 90362 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 116861 1264805 ~ 1284995 (-)
G347969 NA non-coding downstream 124643 1095034 ~ 1277213 (-)
G348012 NA non-coding upstream 6130 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 93579 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 179889 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 195639 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 229360 1632191 ~ 1638134 (-)
LOC113524988 NA other downstream 32394 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 122989 1268309 ~ 1278867 (-)
G347960 NA other downstream 322717 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 477189 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 935601 418307 ~ 466255 (-)
LOC117595719 NA other upstream 47504 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 102808 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 425067 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 579223 1982054 ~ 2127645 (-)
G348145 NA other upstream 593071 1995902 ~ 1998470 (-)

Expression


Co-expression Network