G348012


Basic Information

Item Value
gene id G348012
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1408961 ~ 1463632 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412384
CCAGATTGACTTTGAAGCTCTCCTGATGACCCTTCAGAATCTGTGTCTCACTGCTCCAGTAATCTGGAACCTCGGCGTTGATCTTCTGTATCCACTCCGTCTTCGGCGTCTCTCTCCTGATGTTACTGTCATAGAAcacaaactgctctccatcCACCTGACCCACAGCAGTGAATTCTGGGAAATTTATTCCTGGTGTAACTCCAGTGTGGATGTACTGcagagagtgtgtgactgtaaaagtgtaaaaacacacattaacacacacacacacactaacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412384 True 320 lncRNA 0.47 2 1408961 1463632

Neighbor

gene id symbol gene type direction distance location
LOC113528146 NA coding downstream 92574 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 111153 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 151019 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 168912 1236871 ~ 1240049 (-)
tchp tchp coding downstream 178313 1188924 ~ 1230648 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 71963 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 423020 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 428636 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 437527 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 487997 1951629 ~ 1968139 (-)
G348011 NA non-coding downstream 6130 1401856 ~ 1402831 (-)
LOC113524984 NA non-coding downstream 69120 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 74024 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 97467 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 123966 1264805 ~ 1284995 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 32778 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 119088 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 134838 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 168559 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 229511 1693143 ~ 1795534 (-)
LOC113524988 NA other downstream 39499 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 130094 1268309 ~ 1278867 (-)
G347960 NA other downstream 329822 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 484294 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 942706 418307 ~ 466255 (-)
LOC113542373 NA other upstream 42007 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 364266 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 518422 1982054 ~ 2127645 (-)
G348145 NA other upstream 532270 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 715907 2179539 ~ 2231567 (-)

Expression


Co-expression Network