LOC117595719


Basic Information

Item Value
gene id LOC117595719
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1450335 ~ 1710908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412445
AGTGAAACCCTGAGTTTTCCTCAGTGTTAGCTCGCTAGCGCTGAGCTCCTGCTCCGTGGTAAACACTGTGTTAACTTTACTCCAGTGTGTCGCCGCTTATATAAAGGATTTCACCAGATATTAGTTACggaagtgtttatttctgttgaAAGTCTACAGAGTAAGATGGAGGACAGCAGCAGTATATTAAAAGCTCTGCTTTTCCTCACATTTTCTGTTCATCTTTCATCAGCAGGTGAGTTTAGAAATGTATAGAAGCTTTCAGTTCATTAGAAAgctgtgtggtgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU412446
AGTGAAACCCTGAGTTTTCCTCAGTGTTAGCTCGCTAGCGCTGAGCTCCTGCTCCGTGGTAAACACTGTGTTAACTTTACTCCAGTGTGTCGCCGCTTATATAAAGGATTTCACCAGATATTAGTTACggaagtgtttatttctgttgaAAGTCTACAGAGTAAGATGGAGGACAGCAGCAGTATATTAAAAGCTCTGCTTTTCCTCACATTTTCTGTTCATCTTTCATCAGCAGGTGAGTTTAGAAATGTATAGAAGCTTTCAGTTCATTAGAAAgctgtgtggtgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgtga
>XM_034299265.1
ACCCTGAGTTTTCCTCAGTGTTAGCTCGCTAGCGCTGAGCTCCTGCTCCGTGGTAAACACTGTGTTAACTTTACTCCAGTGTGTCGCCGCTTATATAAAGGATTTCACCAGATATTAGTTACggaagtgtttatttctgttgaAAGTCTACAGAGTAAGATGGAGGACAGCAGCAGTATATTAAAAGCTCTGCTTTTCCTCACATTTTCTGTTCATCTTTCATCAGCAGtcacacactctctgCGATACCTCTACACTGCCATCACACCTGGAATAAATTTCCCAGAGGTCACTGCTGTTGGTCTGGTAgatggagagcagtttgtgTACTACGACAGTAACATCAAGAAGCTGATCCCAAAGACAGAGTGGATACTGAAGGTCGAAGCTGATGATCCAGATTACTGGAAGAAAGAGACTGAGCGTGTGCGGGATCAACAGGCCTGGCTCCGAAACAATGTGGCTACAGTAAAGCAGAGCTTTAATCAAACTGAAGgAGTTCATATGTTACAGTGGATGTACGGCTGTGAGCGTGATGATGACGGCACCAATAGAGGATACGATCAGTACGGTTATGATGGAGAAGATTTTATCAGTCTGAATCTGAAAAATGCAACCTGGACTGCAGCTAAACCTCAAGCTGTGATCTTTATAAACAACTGGCATCCTAGAGGAGCTGAGGCTAAATACTGGAAGGACTTCCTGGAGAATGACTGTATTGATTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGAGGAAAGttcGTCCCAAGGCGTCACTGTTCCAGAAGGAGTCCTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGAAGGACGGAGAGAAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAAGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACAACTACACCTGCATGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAAAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGAAGGATCAGGTGAAGGATCAGCTGGAGGATCAGGTGCTATCGTCGTTGCTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTTGtctggaagaagaagaactctggtgagaggaggaaggaggcaGATGTGAAGTTTTCAGAGAACAGATTTACACTTTCTAGTTCTTGAAAGGGGATTTGatgaatattttgcata
>XM_034299266.1
ACCCTGAGTTTTCCTCAGTGTTAGCTCGCTAGCGCTGAGCTCCTGCTCCGTGGTAAACACTGTGTTAACTTTACTCCAGTGTGTCGCCGCTTATATAAAGGATTTCACCAGATATTAGTTACggaagtgtttatttctgttgaAAGTCTACAGAGTAAGATGGAGGACAGCAGCAGTATATTAAAAGCTCTGCTTTTCCTCACATTTTCTGTTCATCTTTCATCAGCAGtcacacactctctgCGATACCTCTACACTGCCATCACACCTGGAATAAATTTCCCAGAGGTCACTGCTGTTGGTCTGGTAgatggagagcagtttgtgTACTACGACAGTAACATCAAGAAGCTGATCCCAAAGACAGAGTGGATACTGAAGGTCGAAGCTGATGATCCAGATTACTGGAAGAAAGAGACTGAGCGTGTGCGGGATCAACAGGCCTGGCTCCGAAACAATGTGGCTACAGTAAAGCAGAGCTTTAATCAAACTGAAGgAGTTCATATGTTACAGTGGATGTACGGCTGTGAGCGTGATGATGACGGCACCAATAGAGGATACGATCAGTACGGTTATGATGGAGAAGATTTTATCAGTCTGAATCTGAAAAATGCAACCTGGACTGCAGCTAAACCTCAAGCTGTGATCTTTATAAACAACTGGCATCCTAGAGGAGCTGAGGCTAAATACTGGAAGGACTTCCTGGAGAATGACTGTATTGATTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGAGGAAAGttcGTCCCAAGGCGTCACTGTTCCAGAAGGAGTCCTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGAAGGACGGAGAGAAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAAGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACAACTACACCTGCATGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAAAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGAAGGATCAGGTGAAGGATCAGCTGGAGGATCAGGTGCTATCGTCGTTGCTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTTGtctggaagaagaagaactctgGcttcaaacctgttccagccaAACCCTCCTCTGAAGAAGATTTACTCCCAACAGCTTAGTGGGACTGTGTGTCTTCCTGCTGAACTGAGAGAgagagaggaggagagggagataAGGACAGAGTTTAACGGAGATTAAAGATTGTTTCGACTCGCACACAGCTTCAGTCCTCCGTTACACTGAGGGTGACGTCATCAACAGGCAGCGGTGTTTCAGCTGGAAGGAAGCTGGTGTCCGGCTCTGCTCGGTGTTGTGTCGTGTGCTCCATACTTTATTCTGTTGATTAGTGATTCTGATTTTGAACTCTGTCCTGACACTGAGCTCAATTGGTCCCTCGTGCTTAGAATACTTGGTCTCTGTATATAGTTTGCATCTTTATATATAGTAACTATTTTCtacaatgtaaatatatttttcacctTATGTACAGCTttacatgctctctctctctctgtctctctctctctctctctctcttttctctatctatctatctgtctatccacaGTCCCTTCCAAAACTTTGGAACGGTAAGGCCAATTCATCAAAAGGTGGATATGAGACAAAAGTTtaggatttcagcttttatttccttaatttgGATGCATTTGGATAAATTGGCATTCAAAATGTTCCTGTAAACTTCtgtcatgagttacatcatcaataaggATTattgagcctgttccagaagcagccatgcaagcccaagccatgacactatctcaccatgcttgactgatgagcttgtatgttttggatcatgagcagatccattccttctccacactttggcctttccatcactttagtacaggttaatcttggttccagaacttttgtggctcatatCTGTATTTCATTGTGAATTCCAGTATGGCTTTGTGATTCCtgctgctgatgagtggtttgcatcttgtgttCTTGTGAATGTTGGAAACATTCATTcaagattctggtccatgttgacatgattgcattatgcagttattcagatttttcaggtgcactttaaTGCTAcaaatctcccgttctaccacatcgcAAAGGTGTtatattggattcagatcttgTGACTGGGAacgccactgaagaacactgaactcattgtcatgttcttgaaaccagtttgagacaacgtttgctttgtgacatggtgcatgaTCCTACTGGaaatagccattagaagatgggtaaattatggccatgaagggaggcacatggtcagcaacaatattcaAATAAGCCGTGGCATTCAAGCACTGATAGGTATTAATGGCCCCAGactgtgccaagaaaacattccccacaccattgggtccatggattcaagctgttggtgccaaatcaaatcctaccatctgtgtgcttcagcagaaattgagattcatcagaccaggttgTGTTTTTCCATTCTCCAGTCTAGTTTGGGTGaccctgtgcccactgcagcctcagcgtTTTTGAAATAAGTAGCTTTTTAAATGACACAATGATGctaccatcaccatgcttcacattGAGGATCGTCTTCACAGCATATTGAGTAGGACTGGGCTTTCTTCTTGTTACTGTTATATAAAGCCCAGCTTTATGCAGTGTCTGGTTTATGGTTGTTCTGTGCTTTATGCCATCTGAGCTGTGGCTCTCTTCAGTtccttcagagttacccttgCTCTCTTTGTTGTTTCTCTAACTAATCAGAGTCAGTAATCAGAGAGAgttttttaacaatggatttaatggtgctgtgagggatgttcaaagttttgtattgttttgatAAGCAAAAGAGttatttttctaaacaaataTACTGTTTTCTTTACCATCATTTagtatttttatacttttggtATCAACTGCCACTCTACAGGTGTCCCCAGAAACTGGCGACATGCTGAATCCTGAGTTCTGATTGTTTGAAATCCCAAACACCAAATTCTGCAAACCTCCTCCCACTGTTTTTTCCGACACtctcacaatctcacacacGCTGTCTACAGTATTTCTACTCTGGAGTCACACCAGGAATACGTTTCCCAGAATTCAGCACTGTCAGTCCGGTCGATGGAGCAGTATGTGTACTACAACAGCACGGTCAGGAAGATGATCCTGACAGAGTGGAAAAAAGGAGATTGATGCCGATGAGCCATACAGCCATGCAGCTCTTTAACAAGACTGAAGGTGAGAGCCAGGTGACTCTCAACATTATCTAATTATTAATTGCAGAATAACAATGAATTATGCCAACCAATATACATTTATCATGCAGTTTATTAGGAAATGTGTAgctctgcacattcatgcaatgaTCCAATTATctgtggcgtggttgttggtaccggacagactggtttgagttcCTCAGAATCTGTCCTGCTCACTGaacctgttttgttttttacaccaTGGTGTacaccctacactctacactgtgtaaactctagagactcttgttccagatcagcagttactgtaatact
>XM_034299267.1
ACCCTGAGTTTTCCTCAGTGTTAGCTCGCTAGCGCTGAGCTCCTGCTCCGTGGTAAACACTGTGTTAACTTTACTCCAGTGTGTCGCCGCTTATATAAAGGATTTCACCAGATATTAGTTACggaagtgtttatttctgttgaAAGTCTACAGAGTAAGATGGAGGACAGCAGCAGTATATTAAAAGCTCTGCTTTTCCTCACATTTTCTGTTCATCTTTCATCAGCAGtcacacactctctgCGATACCTCTACACTGCCATCACACCTGGAATAAATTTCCCAGAGGTCACTGCTGTTGGTCTGGTAgatggagagcagtttgtgTACTACGACAGTAACATCAAGAAGCTGATCCCAAAGACAGAGTGGATACTGAAGGTCGAAGCTGATGATCCAGATTACTGGAAGAAAGAGACTGAGCGTGTGCGGGATCAACAGGCCTGGCTCCGAAACAATGTGGCTACAGTAAAGCAGAGCTTTAATCAAACTGAAGgAGTTCATATGTTACAGTGGATGTACGGCTGTGAGCGTGATGATGACGGCACCAATAGAGGATACGATCAGTACGGTTATGATGGAGAAGATTTTATCAGTCTGAATCTGAAAAATGCAACCTGGACTGCAGCTAAACCTCAAGCTGTGATCTTTATAAACAACTGGCATCCTAGAGGAGCTGAGGCTAAATACTGGAAGGACTTCCTGGAGAATGACTGTATTGATTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGAGGAAAGttcGTCCCAAGGCGTCACTGTTCCAGAAGGAGTCCTCTCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGAAGGACGGAGAGAAGGTGCATGAGAACGTGGAGCTCAGAGAGACGTTACCCAACCAAGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACAACTACACCTGCATGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAAAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGGAGGATCAGGTGAAGGATCAGGTGAAGGATCAGCTGGAGGATCAGGTGCTATCGTCGTTGCTGTAGTCGCGGCTCTCGTTGCTCTCGTTGCCGTTGTTGCTGGAATTGTTGtctggaagaagaagaactctgACTTCAAACTTGTTCTACCCATAACCCTGCTCTAacagtgtgactgtgtgt

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU412445 False 318 lncRNA 0.41 2 1691927 1710908
TU412446 False 320 lncRNA 0.41 2 1646678 1710908
XM_034299265.1 False 1314 mRNA 0.47 5 1701313 1710902
XM_034299266.1 True 3708 mRNA 0.44 8 1450335 1710902
XM_034299267.1 False 1273 mRNA 0.47 7 1701052 1710902

Neighbor

gene id symbol gene type direction distance location
LOC113528310 NA coding downstream 8143 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 18854 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 29629 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 133948 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 152527 1293874 ~ 1297808 (-)
fam151b fam151b coding upstream 175744 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 181360 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 190251 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 240721 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 446078 2156986 ~ 2163920 (-)
G348011 NA non-coding downstream 47504 1401856 ~ 1402831 (-)
LOC113524984 NA non-coding downstream 110494 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 115398 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 138841 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 165340 1264805 ~ 1284995 (-)
G348079 NA non-coding upstream 22998 1733906 ~ 1859612 (-)
G347900 LOC108255575,LOC108255576,LOC108255573,LOC108255614 non-coding upstream 24005 1734913 ~ 1742300 (-)
G347905 LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573 non-coding upstream 52303 1763211 ~ 1766929 (-)
G348088 LOC108255559 non-coding upstream 74117 1785025 ~ 1866074 (-)
G348092 NA non-coding upstream 79209 1790117 ~ 1871146 (-)
LOC113524988 NA other downstream 80873 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 171468 1268309 ~ 1278867 (-)
G347960 NA other downstream 371196 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 525668 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 984080 418307 ~ 466255 (-)
G348096 LOC108255538 other upstream 116990 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 271146 1982054 ~ 2127645 (-)
G348145 NA other upstream 284994 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 468631 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 890626 2601534 ~ 2664482 (-)

Expression


Co-expression Network