G348088 (LOC108255559)


Basic Information

Item Value
gene id G348088
gene name LOC108255559
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1785025 ~ 1866074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412476
CGGTGACAAGGTTACAGGAGTgtgacagtgagagtgtgtgtagttgtggCAGCAGGAGGAGATGCAGAGCTGCACGAGAGAGCagcttcctctgagacagaacacacagcagctcCTCGATCAGATCTCCTgctgtaaacaacaacaacaacaacaacaacaactacaacaacaacaacagagttGCACACTTGCAGGAGACCGTCAGTGTTCTACAGCCTGAGTTCACTaacaaactgacacacacacacacacaggtacgtACGCAGTAGGCTGAAGGGCCCCATGACGTATCGGAAGAAGTAGTGATCCATGTAGTTGTGAGCGTAGTCCTGCGTCCACACGTCCTTCATGTTCTCCGCCAGGCTGAAGACACACAGACGCCTCAGTGACGAAggctcatcctcctcttcctcatcactCTTATGCTGATGactcttcctcttcatcctctctctctcactctctccctccctctccggTCTGACCTCGGCCTGACGGAACAGAGGCATGGCTCACGTCTCACTCTGAGGACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412476 True 537 lncRNA 0.52 2 1785025 1866074

Neighbor

gene id symbol gene type direction distance location
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 226501 1535595 ~ 1558524 (-)
LOC113528310 NA coding downstream 342833 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 353544 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 364319 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 468638 1314499 ~ 1316387 (-)
fam151b fam151b coding upstream 20578 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 26194 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 35085 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 85555 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 290912 2156986 ~ 2163920 (-)
G347905 LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573 non-coding downstream 18096 1763211 ~ 1766929 (-)
G347900 LOC108255575,LOC108255576,LOC108255573,LOC108255614 non-coding downstream 42725 1734913 ~ 1742300 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding downstream 146891 1632191 ~ 1638134 (-)
LOC117595968 NA non-coding downstream 179323 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding downstream 186483 1598470 ~ 1598542 (-)
G348143 NA non-coding upstream 120109 1986183 ~ 1987047 (-)
G348147 NA non-coding upstream 167483 2033557 ~ 2033864 (-)
G348180 NA non-coding upstream 245589 2111663 ~ 2181860 (-)
G348200 NA non-coding upstream 275542 2141616 ~ 2142102 (-)
LOC117595926 NA non-coding upstream 376134 2242208 ~ 2242816 (-)
LOC117595719 NA other downstream 74117 1450335 ~ 1710908 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other downstream 83475 919384 ~ 1701550 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 115980 1982054 ~ 2127645 (-)
G348145 NA other upstream 129828 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 313465 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 735460 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 907648 2773722 ~ 2831679 (-)

Expression


Co-expression Network