G348103


Basic Information

Item Value
gene id G348103
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1805996 ~ 1942711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412511
GTTTCCTGTACACatacactgttaaaaaaaaaaaaaaaaaaagtttcctcaGGAGTCTTTTGGATGGTTAACAGGTCTAGCTTTCTGAAACACTCTTATttagaacattttctgaaatctAAACGCTCTGCAGTCTTACAGACccgaagtcagttttccaaacagctTTTCTCAGCGACTTAATAGATTTGTGCTAAGGCCAcggcacatttttaaaacatgttcttCATATTGTCCAGGTTATTTGAACAAgtaacaaattaaaaaaaaattgattactGCATCTTTTCACAAATTATCTGCCCTGGATCCAAGAACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412511 True 320 lncRNA 0.34 2 1805996 1942711

Neighbor

gene id symbol gene type direction distance location
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 247472 1535595 ~ 1558524 (-)
LOC113528310 NA coding downstream 363804 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 374515 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 385290 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 489609 1314499 ~ 1316387 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 8918 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 214275 2156986 ~ 2163920 (-)
LOC113542577 NA coding upstream 221762 2164473 ~ 2166382 (-)
LOC113542514 NA coding upstream 226624 2169335 ~ 2178059 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding upstream 248874 2191585 ~ 2199551 (-)
G348067 NA non-coding downstream 10462 1693143 ~ 1795534 (-)
G347905 LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573 non-coding downstream 39067 1763211 ~ 1766929 (-)
G347900 LOC108255575,LOC108255576,LOC108255573,LOC108255614 non-coding downstream 63696 1734913 ~ 1742300 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding downstream 167862 1632191 ~ 1638134 (-)
LOC117595968 NA non-coding downstream 200294 1582720 ~ 1605702 (-)
G348143 NA non-coding upstream 43472 1986183 ~ 1987047 (-)
G348147 NA non-coding upstream 90846 2033557 ~ 2033864 (-)
G348180 NA non-coding upstream 168952 2111663 ~ 2181860 (-)
G348200 NA non-coding upstream 198905 2141616 ~ 2142102 (-)
LOC117595926 NA non-coding upstream 299497 2242208 ~ 2242816 (-)
LOC117595719 NA other downstream 95088 1450335 ~ 1710908 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other downstream 104446 919384 ~ 1701550 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 39343 1982054 ~ 2127645 (-)
G348145 NA other upstream 53191 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 236828 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 658823 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 831011 2773722 ~ 2831679 (-)

Expression


Co-expression Network