G348143


Basic Information

Item Value
gene id G348143
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1986183 ~ 1987047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412574
CTGAGATGGCAGGATGGAAGAGTAGTTGTTGTGTAACACATTCTTTCTGGTGATTTTTTTGAGCTTTCACATCTATCCAGAGTACTCTGTTGCAATTAGCAAGATATTTTGTcactttgaagaaaaaaaaaaaagagggcaTGGATCTCTTCTTAagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaagcccACAGCGTCTTTGCTCTTATTTAAAGCACTCTCATTTACAAGCAgcagataagtgtgtgtgtgtgtgtgtgttgtgaattTAATGTTGAGATTGTGACGACCTCAGCAGATCACACAGTTATCTCTCCCACCTCAGACTGGTGGAACAGCAGCCCTCTTCCTGAAGCTCTCTTTTCACCGGAGAATAATTTACACATCCTTTTCATGAGAGATGTTCTCGATCGAAGAGATACACCAGAGCACCGACCAGCGTGAGGCTCTCAGGGTTTGATCTCACGATGAAACGGCTTGGCTGATCGGTCATGATAGCCTCTGACCTTATTATTACCGGAAAACATGTCTTAGCCAATTAAGCTGAGAATTTCCAAGCCCAGTCCTAACAGATTAGATCAGTTCTGTTTCATCAGTACATTACCAGCAGGCTGAAGGTGATGATGTTACGCCACACGGCCACACACATGTCCACGTGTTTGTTTTGAGCGCCGTGCAACCCCCTGCTTTAACACCTCCAGTATGACTTGAGCCAaaattttttgtctgtttgctcTCTGCTTGTTTTGACtcgcatgattttttttgtactgatgACTAACTCTCAGTACGctctcctctctgttctctctctctctctctctctctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412574 True 842 lncRNA 0.44 2 1986183 1987047

Neighbor

gene id symbol gene type direction distance location
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding downstream 18044 1951629 ~ 1968139 (-)
rad17 rad17 coding downstream 78610 1901159 ~ 1907573 (-)
ccdc125 ccdc125 coding downstream 86119 1892268 ~ 1900064 (-)
fam151b fam151b coding downstream 94057 1886652 ~ 1892126 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 427659 1535595 ~ 1558524 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 169939 2156986 ~ 2163920 (-)
LOC113542577 NA coding upstream 177426 2164473 ~ 2166382 (-)
LOC113542514 NA coding upstream 182288 2169335 ~ 2178059 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding upstream 204538 2191585 ~ 2199551 (-)
ncaph ncaph,LOC107709847 coding upstream 214669 2201716 ~ 2209741 (-)
G348103 NA non-coding downstream 43472 1805996 ~ 1942711 (-)
G348094 NA non-coding downstream 110427 1794830 ~ 1875756 (-)
G348092 NA non-coding downstream 115037 1790117 ~ 1871146 (-)
G348088 LOC108255559 non-coding downstream 120109 1785025 ~ 1866074 (-)
G348079 NA non-coding downstream 126571 1733906 ~ 1859612 (-)
G348147 NA non-coding upstream 46510 2033557 ~ 2033864 (-)
G348180 NA non-coding upstream 124616 2111663 ~ 2181860 (-)
G348200 NA non-coding upstream 154569 2141616 ~ 2142102 (-)
LOC117595926 NA non-coding upstream 255161 2242208 ~ 2242816 (-)
G348233 NA non-coding upstream 319078 2306125 ~ 2308604 (-)
G348096 LOC108255538 other downstream 157538 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 275275 1450335 ~ 1710908 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other downstream 284633 919384 ~ 1701550 (-)
G348145 NA other upstream 8855 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 192492 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 614487 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 786675 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 797630 2784677 ~ 2785896 (-)

Expression


Co-expression Network