G348180


Basic Information

Item Value
gene id G348180
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2111663 ~ 2181860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412614
CgggtctgtttttattttctattcttatCCTCTCTTTGACGTAAGACAGGTCACATCCTCTTGCCCGTATTTCTCTCTTGCGTCCGtcagaacaattttttttaaagctttctgTACGGGAATCAGGAAGGCCAGTAAACACACTAATCATGCTTTCTGGCCCTCAGCAGGCTATAGTATAGTTAACAAATCTTTCCACGGTTCCAAGGCCTAACAGGAAATGTCATATTGAAGTCTATAAATACACTGTAGGTTAGTGTTTATGGGGACAGAAGAATGTAGAATTGACATCCTGATTTTTTGCTGACAGGGTTAATTTTAGAAAGCTATTTCCTTTTGTGATTAGATGAATgaagcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATGGTTTGGATAATCATTCTGATATCGGCAGCCGTTTCTTAGAGAAGAGGAATTCCCACAGAGAAATGACAGCTGGACTCCCTCATCACTTTATAATTGCGCTTTAAGTTTATTAGAGATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412614 True 513 lncRNA 0.39 2 2111663 2181860

Neighbor

gene id symbol gene type direction distance location
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding downstream 143524 1951629 ~ 1968139 (-)
rad17 rad17 coding downstream 204090 1901159 ~ 1907573 (-)
ccdc125 ccdc125 coding downstream 211599 1892268 ~ 1900064 (-)
fam151b fam151b coding downstream 219537 1886652 ~ 1892126 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 553139 1535595 ~ 1558524 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding upstream 9725 2191585 ~ 2199551 (-)
ncaph ncaph,LOC107709847 coding upstream 19856 2201716 ~ 2209741 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding upstream 71121 2252981 ~ 2282993 (-)
ogfod2 ogfod2 coding upstream 175411 2357271 ~ 2363155 (-)
LOC113542614 LOC108255713 coding upstream 253464 2435324 ~ 2458405 (-)
G348147 NA non-coding downstream 77799 2033557 ~ 2033864 (-)
G348143 NA non-coding downstream 124616 1986183 ~ 1987047 (-)
G348103 NA non-coding downstream 168952 1805996 ~ 1942711 (-)
G348094 NA non-coding downstream 235907 1794830 ~ 1875756 (-)
G348092 NA non-coding downstream 240517 1790117 ~ 1871146 (-)
LOC117595926 NA non-coding upstream 60348 2242208 ~ 2242816 (-)
G348233 NA non-coding upstream 124265 2306125 ~ 2308604 (-)
G348264 NA non-coding upstream 218997 2400857 ~ 2401493 (-)
G348283 NA non-coding upstream 241855 2423715 ~ 2424331 (-)
G348309 NA non-coding upstream 363555 2545415 ~ 2546515 (-)
G348145 NA other downstream 113193 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 283018 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 400755 1450335 ~ 1710908 (-)
LOC113542373 NA other downstream 581269 1505639 ~ 1530394 (-)
LOC113524988 NA other downstream 742201 1356568 ~ 1369462 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 419674 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 591862 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 602817 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 629684 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 974182 3156042 ~ 3166254 (-)

Expression


Co-expression Network