LOC113542580


Basic Information

Item Value
gene id LOC113542580
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2179539 ~ 2231567 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412644
tgcacacacacacatagactcatacacacatacacacatacacacacacacacaagacaaagacaaataCGAGACAGGCTTCAGGACCAGAGCTGCTGGAGGTTTAAGGCTGTCTTTCGGATGTCCTTTAGAAGACGTCAGTGACCCAAGtgcagagacaaagacagaaacgATGACCAACATGGAGAACGGGCGAAGCCAGCTGCAGCAGGCTCAGCAGGACGTGGAGGAGGTTCGCGTGATCATGTTGGAGAACCTGAACAAGGCCAGTGAGCGTGAGGGGAAACTGGGAGACCTGGAGAACAGAGCTGACCAGCTACTGGAACagAGCAAGGTTTTTTCCAAAACTGCAAACCAAGTGAAGCAAAAAAAGCAATGGGAGAACATGAAGATGAAGGTGATCCTGGCAGTCATCGTTggagtggtggtggtggtggctgTCGTCATAATTGCTGTGTTAAACGTTAATCGTTAAGTTAATCGGTACTGAGTGAAAAACAATTCCGGTTGACGTGCAAAAAGGAAGAGAAGATGaattgctttgtttttgcagGTTGCTCAGGAAATCATGGAGTCGGTTCATTTGTTAAACGCTAGCGTCGGGACTCGTGCTAAAGCGCTGTGTTTGTCCTAGCTtaaaaaatctcagagtgtgttCAAAGATCTGATGGTACTCATGGACACTTGCTGCTGTCTTTGCTTTCATTTCTACATAAGTATCGTCCGTAACTGGCCTCTGTGCAAACATCTGAATAGTTAACCGAACAAATGTGTGTTGGAGGAACCGGTAGATGAGGACACTGAGCTGACGGTGAAGAACTTTCAGAAGCTTTTCTGCTGGAAATGGTGAAGTTGGTCATACTGTTACTCTTCAAACTGAGGAAAGAAGACTGTagatgcattttaaatgtattgaatATGGATTACTGTTGGTGACCATGTATTGATGTGTCGGATCAGTTAACCTCATAGAACCTATAGTACcagtacactcttagaaaaaaaggttccCTATAGCCCTATAAAAAGATTCCCTTTGGCCCAGCTTTGCTGTCGCAGACAAAATCACACctcataaaaaaagaattctttggtggTGAGTTGAGATCTGCAGTCTTAGAACGCACCACGAGACACTCTCACATTATTCACGGCTGATTTAGTGTGACCCAAAACAGCTGGCAGGgtgagaaatgttttattaagaTCTCTGAGCGTGAGCGCTGCTACGACGCTCATCTAAAAtgcaccaataggaggacggcgtAGGACGACGCCAAACTCCCGGGACAGCTACAAGTACGGTAGTGGCGGTGGTGAAACTTAAACGAAACATGGGATTTAAAAGAAGAGAGGTTTGTTGAATTGTGGTTTAAGCACAAGATCATTAAAAATACTGACTTGCTCATATTTTCTGTATGCTCACACCGATGGATGATGCAAACAGAGTGCGGTCATTTTCTgcaatcacaggtctatcgttagaggatcttcatcatataatctgacatatACAACACACATTATTGCACAATCTGATATATAATTTGGCCAAGATTCTATTAggatcttgtacagtgtgactaaaactggtttaaatgggagtaaacagatttttttttttttttaaagcctttaGAAAGCTACATCTATTAACCATCTAAAGAACCCTTGGGGAACCCTCTTTTTTTCCTAAGCGTGCAAACTCACTAAAATGAGTATCAgtaaaaatattacagttgTGACTCTATTGGAAGTTTTTGTCTATAAAAGTTAATAaaccttcatttaaaaagacattCTTGTCATTCAGCATTGTAAGCTGTGTTCTTTAGTATCCGATGTTTCTGAATAAGGTGCATCTGAAATTGATGCTGCTAAAATAAAGCA
>TU412645
cacgcatacacacacacacacacacacacaaagacaaagacaaataCGAGACAGGCTTCAGGACCAGAGCTGCTGGAGGTTTAAGGCTGTCTTTCGGATGTCCTTTAGAAGACGTCAGTGACCCAAGtgcagagacaaagacagaaacgATGACCAACATGGAGAACGGGCGAAGCCAGCTGCAGCAGGCTCAGCAGGACGTGGAGGAGGTTCGCGTGATCATGTTGGAGAACCTGAACAAGGCCAGTGAGCGTGAGGGGAAACTGGGAGACCTGGAGAACAGAGCTGACCAGCTACTGGAACagAGCAAGGTTTTTTCCAAAACTGCAAACCAAGTGAAGCAAAAAAAGCAATGGGAGAACATGAAGATGAAGGTGATCCTGGCAGTCATCGTTggagtggtggtggtggtggctgTCGTCATAATTGCTGTGTTAAACGTTAATCGTTAAGTTAATCGGTACTGAGTGAAAAACAATTCCGGTTGACGTGCAAAAAGGAAGAGAAGATGaattgctttgtttttgcagGTTGCTCAGGAAATCATGGAGTCGGTTCATTTGTTAAACGCTAGCGTCGGGACTCGTGCTAAAGCGCTGTGTTTGTCCTAGCTtaaaaaatctcagagtgtgttCAAAGATCTGATGGTACTCATGGACACTTGCTGCTGTCTTTGCTTTCATTTCTACATAAGTATCGTCCGTAACTGGCCTCTGTGCAAACATCTGAATAGTTAACCGAACAAATGTGTGTTGGAGGAACCGGTAGATGAGGACACTGAGCTGACGGTGAAGAACTTTCAGAAGCTTTTCTGCTGGAAATGGTGAAGTTGGTCATACTGTTACTCTTCAAACTGAGGAAAGAAGACTGTagatgcattttaaatgtattgaatATGGATTACTGTTGGTGACCATGTATTGATGTGTCGGATCAGTTAACCTCATAGAACCTATAGTACcagtacactcttagaaaaaaaggttccCTATAGCCCTATAAAAAGATTCCCTTTGGCCCAGCTTTGCTGTCGCAGACAAAATCACACctcataaaaaaagaattctttggtggTGAGTTGAGATCTGCAGTCTTAGAACGCACCACGAGACACTCTCACATTATTCACGGCTGATTTAGTGTGACCCAAAACAGCTGGCAGGgtgagaaatgttttattaagaTCTCTGAGCGTGAGCGCTGCTACGACGCTCATCTAAAAtgcaccaataggaggacggcgtAGGACGACGCCAAACTCCCGGGACAGCTACAAGTACGGTAGTGGCGGTGGTGAAACTTAAACGAAACATGGGATTTAAAAGAAGAGAGGTTTGTTGAATTGTGGTTTAAGCACAAGATCATTAAAAATACTGACTTGCTCATATTTTCTGTATGCTCACACCGATGGATGATGCAAACAGAGTGCGGTCATTTTCTgcaatcacaggtctatcgttagaggatcttcatcatataatctgacatatACAACACACATTATTGCACAATCTGATATATAATTTGGCCAAGATTCTATTAggatcttgtacagtgtgactaaaactggtttaaatgggagtaaacagatttttttttttttttaaagcctttaGAAAGCTACATCTATTAACCATCTAAAGAACCCTTGGGGAACCCTCTTTTTTTCCTAAGCGTGCAAACTCACTAAAATGAGTATCAgtaaaaatattacagttgTGACTCTATTGGAAGTTTTTGTCTATAAAAGTTAATAaaccttcatttaaaaagacattCTTGTCATTCAGCATTGTAAGCTGTGTTCTTTAGTATCCGATGTTTCTGAATAAGGTGCATCTGAAATTGATGCTGCTAAAATAAAGCA
>XM_026940205.2
tgtcaatctggcaacccaggaCGAGGGACAGCCTCATGCACATGTGCAACCACAGAGCAGAAAAGGTTCCTTTAAAAACTCAGCACAGAGCACTGAGCTCAGAGAACCTAGCGGGAAGCAAGAGctcacacgcacatgcacacacacacatagactcatacacacatacacacatacacacacacacacaagacaaagacaaataCGAGACAGGCTTCAGGACCAGAGCTGCTGGAGGTTTAAGGCTGTCTTTCGGATGTCCTTTAGAAGACGTCAGTGACCCAAGtgcagagacaaagacagaaacgATGACCAACATGGAGAACGGGCGAAGCCAGCTGCAGCAGGCTCAGCAGGACGTGGAGGAGGTTCGCGTGATCATGTTGGAGAACCTGAACAAGGCCAGTGAGCGTGAGGGGAAACTGGGAGACCTGGAGAACAGAGCTGACCAGCTACTGGAACagAGCAAGGTTTTTTCCAAAACTGCAAACCAAGTGAAGCAAAAAAAGCAATGGGAGAACATGAAGATGAAGGTGATCCTGGCAGTCATCGTTggagtggtggtggtggtggctgTCGTCATAATTGCTGTGTTAAACGTTAATCGTTAAGTTAATCGGTACTGAGTGAAAAACAATTCCGGTTGACGTGCAAAAAGGAAGAGAAGATGaattgctttgtttttgcagGTTGCTCAGGAAATCATGGAGTCGGTTCATTTGTTAAACGCTAGCGTCGGGACTCGTGCTAAAGCGCTGTGTTTGTCCTAGCTtaaaaaatctcagagtgtgttCAAAGATCTGATGGTACTCATGGACACTTGCTGCTGTCTTTGCTTTCATTTCTACATAAGTATCGTCCGTAACTGGCCTCTGTGCAAACATCTGAATAGTTAACCGAACAAATGTGTGTTGGAGGAACCGGTAGATGAGGACACTGAGCTGACGGTGAAGAACTTTCAGAAGCTTTTCTGCTGGAAATGGTGAAGTTGGTCATACTGTTACTCTTCAAACTGAGGAAAGAAGACTGTagatgcattttaaatgtattgaatATGGATTACTGTTGGTGACCATGTATTGATGTGTCGGATCAGTTAACCTCATAGAACCTATAGTACcagtacactcttagaaaaaaaggttccCTATAGCCCTATAAAAAGATTCCCTTTGGCCCAGCTTTGCTGTCGCAGACAAAATCACACctcataaaaaaagaattctttggtggTGAGTTGAGATCTGCAGTCTTAGAACGCACCACGAGACACTCTCACATTATTCACGGCTGATTTAGTGTGACCCAAAACAGCTGGCAGGgtgagaaatgttttattaagaTCTCTGAGCGTGAGCGCTGCTACGACGCTCATCTAAAAtgcaccaataggaggacggcgtAGGACGACGCCAAACTCCCGGGACAGCTACAAGTACGGTAGTGGCGGTGGTGAAACTTAAACGAAACATGGGATTTAAAAGAAGAGAGGTTTGTTGAATTGTGGTTTAAGCACAAGATCATTAAAAATACTGACTTGCTCATATTTTCTGTATGCTCACACCGATGGATGATGCAAACAGAGTGCGGTCATTTTCTgcaatcacaggtctatcgttagaggatcttcatcatataatctgacatatACAACACACATTATTGCACAATCTGATATATAATTTGGCCAAGATTCTATTAggatcttgtacagtgtgactaaaactggtttaaatgggagtaaacagatttttttttttttttaaagcctttaGAAAGCTACATCTATTAACCATCTAAAGAACCCTTGGGGAACCCTCTTTTTTTCCTAAGCGTGCAAACTCACTAAAATGAGTATCAgtaaaaatattacagttgTGACTCTATTGGAAGTTTTTGTCTATAAAAGTTAATAaaccttcatttaaaaagacattCTTGTCATTCAGCATTGTAAGCTGTGTTCTTTAGTATCCGATGTTTCTGAATAAGGTGCATCTGAAATTGATGCTGCTAAAATAAAGCATATG

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412644 False 1890 TUCP 0.42 3 2179543 2185944
TU412645 False 1867 TUCP 0.42 4 2179543 2231567
XM_026940205.2 True 2030 mRNA 0.42 3 2179539 2186080

Neighbor

gene id symbol gene type direction distance location
LOC113542514 NA coding downstream 1480 2169335 ~ 2178059 (-)
LOC113542577 NA coding downstream 13157 2164473 ~ 2166382 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding downstream 15619 2156986 ~ 2163920 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding downstream 211400 1951629 ~ 1968139 (-)
rad17 rad17 coding downstream 271966 1901159 ~ 1907573 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding upstream 21414 2252981 ~ 2282993 (-)
ogfod2 ogfod2 coding upstream 125704 2357271 ~ 2363155 (-)
LOC113542614 LOC108255713 coding upstream 203757 2435324 ~ 2458405 (-)
LOC113542490 NA coding upstream 234005 2465572 ~ 2482183 (-)
sfrp1a sfrp1 coding upstream 469430 2700997 ~ 2712386 (-)
G348200 NA non-coding downstream 37437 2141616 ~ 2142102 (-)
G348147 NA non-coding downstream 145675 2033557 ~ 2033864 (-)
G348143 NA non-coding downstream 192492 1986183 ~ 1987047 (-)
G348103 NA non-coding downstream 236828 1805996 ~ 1942711 (-)
G348094 NA non-coding downstream 303783 1794830 ~ 1875756 (-)
LOC117595926 NA non-coding upstream 10641 2242208 ~ 2242816 (-)
G348233 NA non-coding upstream 74558 2306125 ~ 2308604 (-)
G348264 NA non-coding upstream 169290 2400857 ~ 2401493 (-)
G348283 NA non-coding upstream 192148 2423715 ~ 2424331 (-)
G348309 NA non-coding upstream 313848 2545415 ~ 2546515 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 51894 1982054 ~ 2127645 (-)
G348145 NA other downstream 181069 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 350894 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 468631 1450335 ~ 1710908 (-)
LOC113542373 NA other downstream 649145 1505639 ~ 1530394 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 369967 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 542155 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 553110 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 579977 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 924475 3156042 ~ 3166254 (-)

Expression


Co-expression Network