G348233


Basic Information

Item Value
gene id G348233
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2306125 ~ 2308604 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412672
aTGCATGAAAAATCAAGTCAAATGTGTAGCAGGTGCAAATGATGGAATTACTGGAGTGCACCACGTAAAGTAAATCCCGTCCAAATAGGGCTATACtttgtattaatgtgtttaagATAAAGATCAAACTCTTAGCTCTCCTGTAAAAAATCCTCTAATGTTACAGTGAAGTTTGGTCATGTTTGTAGATGTCAGCACATGTCTTTAACCACAGTAGCATTGAAGAACTGGATGTGTTTCGAGGCAGAAATTTACACAAAAGGTTTGTTCATAACCAACTACCTTGTCTGCCTGACTTCATTTGTTGTGAAAGTCCAAAAAATTCCTTTtaaaaaacttcttttttttttttttttttttgactacaAACTGCAGTCATCAAAGCACCTTTAAAATACCAGTTTTGATCTCCCttagtattttaataatttacaaaagCACTTGCACTTGAGGTTACAGCACATTAACTGACAAAGCACAAATACTGAACAAAAATCgattgcattattataaacattatgttTCTGATCTTCAAAGTGATTTTCTTcttaccattaaaaaaatgtaaaaatcactCGCAAATAGTCAGGGCTATTACGAAATAGCCTGAGGtgtcactggaaaaaaaacaaaaaacgacTAAGTGACTAAGGCAATGAGTTGTCCTGAATTAGTGTCAATTTCTACCCACAGGATTGTAAACAGGAACAGTAGCTTCAAATCGAATGCCTGATTTCATTTCCCAAGAAAAGAAGAATGTCATGAGCGTGACACAGCTAACTAACGTGAAAAATTTCAGAAACAGCGTGAAACAGCTACCATATATGCCACTAGCTGTGTATAATAACTGACTGGACACTGAAGTGATTATGGCTACTTGGTGTAAGCGtacattctggaaaaaaaaaaaaaacattggaatGCATCGATACGGATCAGTACGAAATATGCGTGGATGTTTTTTTGCGTGGTAGTGTTCGATAACGATACTGACACCGCAGTAATGAGTAATAACTTGGAAAGGAacggaacattttatttagctttgtttATGTTCAAGTAGTGGCCTCtttctttataatgttagcGAGTTGATTTTAAATCAAGTTAGCTAGTTACATTAGTTACTTCGGATCTAGAGcaggttttatttcacttcCAAAAAACGTATGTTTCAATCTCAATCCCTCACTGTCAATGATCAATAGCAGCAGActgtcaagaacaacatactgggtaaGAGCTGTAATTTTCACTCACCTAACTTAGCTAGCATCTGCTGCCATGATGAACTCCTCAAATGTTTCATCAGGTGACTTGTATTGAAGGATGATGCTGTAGTTGCTGCTCTGGATATTTCCACCATATGCAGTccaattattaatcattaaatatGCACAGATCGCTTCAGTTTCGTTTGAACGTACAACTAGCATCACCTGGTAATGGATTTCTATTGAAATTGAAATACCTGATATCAGTATTAATATCAATGCATCCCTACTCAAATGGAAACAATCTGATCGttggaaaaaagttaaataaataaatgtaaaaatttaagCTAAGGAACATTTCAATTTCGTAGCTTCAGTTCCTAGTGCCAAATCAATAAGATTAACATCACCTGGCTTTTCTAACATCTACACATACAGTACCTACACACATGTTCATTTACAAAGcgttacaaataaataaaaagcaaatagaaataaataataatttcaccCTGATTTCTGATCcaaattcactttttaaaatgagatgctttaaaaaaaaatctgaacattTCAGTTGTCAATCAAATGATTCACAATTAAAATACAACATGATGAATACAACAAGCTAAACccaacaaatctaaaaaaaatcccttttgTGTAggtaaaaatgtagaaatgtgtttaaaatggattttttaaaaaaaaaaaatcataaaaatcacatcCCTTATGTTCGACAGCTTAGTGAGAAAGTATGCATTGTCTAATTTATAAGGCTCAATGAACCCGGTGCGTAGTGCAAGACTCGACAGTGCAATAAAAGAGCTAGTGCTCTTCATatctaaactgaaaaaaataaattaaaaaaatcacagttaaaTTACAAACAACTGAAGGAGATGCACCTCGGTTCCCTCTACACACGATTGTCTACCTCATCCATTCCGAGCTGGTCTTGTTTTGATAGGTTGAGGGACATCTCAGCCTGCATCTGCTCTAAGGTCACAGGGTCATCAAGATCTGGGCTCAGGGCTTCTGCTTCCGGCTCCGGTTCTGGTTCTGCGTGAGGTATAGGCAGGTAGCCGCCAACACGGGGCAGGCACATGCACCAGCCGGCGCCGGACAGGTCCAGCTCGTTGTAGTTGAATCCAGCCTTCTTGAGTATCTTGAAGTCCACCATGTCTACGGATTCGCTCATCTCCACCAGAAGGTTCCAGAAGATGCAGCTCAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412672 True 2457 lncRNA 0.36 2 2306125 2308604

Neighbor

gene id symbol gene type direction distance location
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding downstream 23132 2252981 ~ 2282993 (-)
ncaph ncaph,LOC107709847 coding downstream 96384 2201716 ~ 2209741 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding downstream 106574 2191585 ~ 2199551 (-)
LOC113542514 NA coding downstream 128066 2169335 ~ 2178059 (-)
LOC113542577 NA coding downstream 139743 2164473 ~ 2166382 (-)
ogfod2 ogfod2 coding upstream 48667 2357271 ~ 2363155 (-)
LOC113542614 LOC108255713 coding upstream 126720 2435324 ~ 2458405 (-)
LOC113542490 NA coding upstream 156968 2465572 ~ 2482183 (-)
sfrp1a sfrp1 coding upstream 392393 2700997 ~ 2712386 (-)
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding upstream 437543 2746147 ~ 2773403 (-)
LOC117595926 NA non-coding downstream 63309 2242208 ~ 2242816 (-)
G348180 NA non-coding downstream 124265 2111663 ~ 2181860 (-)
G348200 NA non-coding downstream 164023 2141616 ~ 2142102 (-)
G348147 NA non-coding downstream 272261 2033557 ~ 2033864 (-)
G348143 NA non-coding downstream 319078 1986183 ~ 1987047 (-)
G348264 NA non-coding upstream 92253 2400857 ~ 2401493 (-)
G348283 NA non-coding upstream 115111 2423715 ~ 2424331 (-)
G348309 NA non-coding upstream 236811 2545415 ~ 2546515 (-)
G348310 NA non-coding upstream 237968 2546572 ~ 2548040 (-)
G348311 NA non-coding upstream 239519 2548123 ~ 2549010 (-)
LOC113542580 NA other downstream 74558 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 178480 1982054 ~ 2127645 (-)
G348145 NA other downstream 307655 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 477480 1827898 ~ 1828645 (-)
LOC113542373 NA other downstream 775731 1505639 ~ 1530394 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 292930 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 465118 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 476073 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 502940 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 847438 3156042 ~ 3166254 (-)

Expression


Co-expression Network