zmat4a (zmat4,LOC108434259,LOC107594996,LOC106580521)


Basic Information

Item Value
gene id zmat4a
gene name zmat4,LOC108434259,LOC107594996,LOC106580521
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2601534 ~ 2664482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412757
GCGCTCCACCGTTGCATGGATTACGGCGTTTCCCTGCAGCTTCAGCACGAGCTCGCCGAGCCCCCGACGCGTTTACCGCGCGACTACACACTGCAGCTACAGaTGAAGTCAACGGAAGTGGAGCAGGGCCTTTTCACGGACACCTACTGCAAAGTGTGCAGTGCACAACTCATCTCCGAGTCTCAGAGAGTGGCACACTACGAGAGTCGAAAACATGCGAACAAAGTGCGTCTGTACTACATGCTGCACCCGGTGGATGGAGGCTGCCCGGCCAAGAAACTACGGACACACAACTCATGATCTCGGCAGAGTTTAAAGTCAGCACTTTGTTGATGGAGATGAGAGGAAACAGTGTCGAGGTGGAAGCAATTATTTTTGCGTTGCTCTGTGCGATAGCTCCCGGATCAATGCGCTTTGCATGGCCGCTGTTGCATGCATGCTGATGGAAACTGCAGATTACTATAATGTGTATTACTATAATGTGTTTTACTATAATGCTGAGCACCGGGCTTATTTTCGTCCTCTGAATGttgtttttcagactttttctGCTTGAAGGCTAGAATAACTttgctattattatttgtgtgtgttcttttgcATCTTCATATTGTTGCAGTTAGATGTGAGAAAGTTGCTTATGTTTGCACAAAGTAAGATTTAAGCAGATTAAAATCACAGACTCTAAATACTTTTGAATTTCTGCTTCTTAATATTTCCTGTAAAAGTGTCACTAGAGATCTGCCTTCACACGGATGTAGAAGGATTATGTTACTTATGATGTCACTTTCACTAAATATCTGTCTGGAAG
>XM_026939656.2
actccATCCCGCCGGCCAATGAGACGCGAGCGGCGGGGCGGAGCGTTTGACCCGCGAGCGAAACGGCAGCGCGCGACCTCGCTTTCCCTTGCCAGTACCGCACGCACGCGCTCCACCGTTGCATGGATTACGGCGTTTCCCTGCAGCTTCAGCACGAGCTCGCCGAGCCCCCGACGCGTTTACCGCGCGACTACACACTGCAGCTACAGaTGAAGTCAACGGAAGTGGAGCAGGGCCTTTTCACGGACACCTACTGCAAAGTGTGCAGTGCACAACTCATCTCCGAGTCTCAGAGAGTGGCACACTACGAGAGTCGAAAACATGCGAACAAAGTGCGTCTGTACTACATGCTGCACCCGGTGGATGGAGGCTGCCCGGCCAAGAAACTACGGACACACAACGGCAGCGAGGAGGGAGACGTGGACAAGAATAAGTGTTGCACGTTGTGTAACATGTCCTTCACCTCAGCCGTGGTTGCGCAGTCGCACTATCAGGGCAAGATCCACGCTAAGAGACTCAAACTAGTGCTGGGAGAGCAGCCTGGCATCACAGGAaaagAGGTGGCACCCAGTCCAGTTAAAATGCCATCTGAAAGCTGGCCACAGCTGAATGGGGATTCAGATCGCTACTGCCAGCTGTGCCACGCGTGGTTCAACAACCCGGGCATGGCGCGACAACACTATGATGGCAAGAAGCACAAGAAGAACGCAGCACGTGCCGACCTGCTGGAGCAGTTGGGCAAGACACTGGACATGGGTGAAATGAAAGGTCTGAAGCGCAGCTACACTTGCGATGTGTGCAGCGTGACGCTCAACTCGGTGGCACAATACCACGCACACCTGCAGGGCTCCAAACACCAAAACAActTAAAGAATCAGTTATGTGTCCAGTAAAGCCGTACAGGAAGCTAACTGTCAGATTGATTGATGTCACACGGGCTTTGATCGGCTCGCCCTGAAATCTCTGCCTCTTCCCtcttgtctgtttctttctccatttctgcATCTTGTTGTCATCATCTGTCTATCTCAACCAGGAAGaccaaacaaattttttttaaactttcatttaAGTCCACTTCTGATGTCATACTATACGTTCCATTGTCCTGACTTTGAAGATGCATAGACTGCATTGTTCACATCATGTTTGTGGGATTAGTTACAGCTCAGTTGGAATCGTATCTTCTGTCTCGTCTTTATGTTTGTGGGTTGAACGACTTCAACTTGCATTCGTTCTGTCAGCCAGGTGTTGCGTGCATGAGtgatttattctatttttttttttttcgattttCAACCCAGCTAAGCAATATGTATGGAAAATCTGCCAAATGTATTATTGATTAAATGGATTCTGATTTAATAGCaacactgaaagagaaaaatgacaaatagtACTTTAAAGTTGGATGTATGTGCATCTCACATTCTACAACaagggcattgtgggtaatctGATAGGAGATATGGCCATATCATCAGGGTTTGAAATACAAAGATCTCACCAGGTTTAAAGGGTTTAAATTGACTAGTGCAACAGCTCGTTTGCACAATGTTCCTCCTTTTACCCAAAATATAGTGGATCAACCAAGACATTTGGTGTCAGatgtttgcttttttagttTCGCCCTGGAGCTGCGAGGCTAACGAGTACGAAAAACCTCAAGCCTCCTGTTTAGCTTCATTTATCTGCATGCCTAAGCAAAGTTCAGACACCAAAACCTGTTAATCAACTGTATTTGGGCTAATGAGGAAACTTGTGTAAATTTTGAGATTCAGTCTAGTTTTAAAAGTATTGTGACTATGTgttctttttaatattacaaaaaaaaaaaagttcgtTTTCTTTTACCGTATATGGCATATGCTACATTTTTAAGTGTGACTACTAAATTCTTATAGGTATCAATATTAGGGAGAATTACTCTAAGAACTGCATtgtcattttataatgaatgaattagattatttattattagaaaaatagcatttattttttattgtcattaatGACTTACTGTGTATGTTTGAAAGTCATTTTATGTTGGTTATGTGTCTGgatatttgttcttttttttaatctgacatttattttactataaacaATGGATGCATTATATAATATTGAGAGTGATTTgagtttttaaaggaaaagttcagaaaaaaaatgacattgtaaAGCTATGGAATCTAATTTGTGCAGTAGTATGGAGAGTCTGAATCTACcaaataatataatgtgataAAGTATTAGCACATTAGTACAGACTAAGGatttttgcactggagctaagaggctaatgtagctagtcCAAGAACATCTGTAAATTCACAAATGACATTGTGAAGCTTTGAAATCCAGCTTTCCAGTATAATTCGAAACTATGGTACACTTTTGGTCTAGCATGGAATTGTGCTAAGGAGAAACGTGAATctggttgtccaagatggctgcacATTCACACTACACAATGAAGTTTGGTTTATGTTTATAGATGTTTGTATACAGGAAGTCTCACTGTGTcaaaaagattttgggtgagactTCCATTACATTTGCATAAAGCTCCAGTGGAAAACCAAAAAAGTGAACACCAAACATGACATGGCTGATTAATTACAAGCTGTAAGGGAAACTGTGTAAATTTGATTGTTTACTGAACTATTCTTTTAAGATGATTCATCTCCTTAACGCtagaaaaaattttaataacatttgatATTAACGATGCCGATTCTGTGCACGAACAAGTCAGCATAAATGTTCTCAAAGTTTGAGTAATTCGGTTTGCTCATTGTTGCACTGAAGCTGTGTGTGAATGGTAGCGTGTTCCCTTATAGAGAGCAAGCTTCAGTTCTGCCTGAACACACTCCCTCCTTGTGCTATGGATCATGCGATCAGCtgtaaatattgaataaaagaCGCTTGCAGCCCTCTTAA

Function

symbol description
zmat4 Enables identical protein binding activity. Predicted to be located in nucleus.

NR:

description
zinc finger matrin-type protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412757 False 811 TUCP 0.45 4 2637755 2664375
XM_026939656.2 True 2943 mRNA 0.42 7 2601534 2664482

Neighbor

gene id symbol gene type direction distance location
LOC113542490 NA coding downstream 119351 2465572 ~ 2482183 (-)
LOC113542614 LOC108255713 coding downstream 143129 2435324 ~ 2458405 (-)
ogfod2 ogfod2 coding downstream 238379 2357271 ~ 2363155 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding downstream 318541 2252981 ~ 2282993 (-)
ncaph ncaph,LOC107709847 coding downstream 391793 2201716 ~ 2209741 (-)
sfrp1a sfrp1 coding upstream 36515 2700997 ~ 2712386 (-)
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding upstream 81665 2746147 ~ 2773403 (-)
zgc:153409 LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222 coding upstream 120079 2784561 ~ 2785074 (-)
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding upstream 120957 2785439 ~ 2785937 (-)
LOC113542230 LOC108255680 coding upstream 121767 2786249 ~ 2791574 (-)
G348296 NA non-coding downstream 7211 2549097 ~ 2594323 (-)
G348311 NA non-coding downstream 52524 2548123 ~ 2549010 (-)
G348310 NA non-coding downstream 53494 2546572 ~ 2548040 (-)
G348309 NA non-coding downstream 55019 2545415 ~ 2546515 (-)
G348283 NA non-coding downstream 177203 2423715 ~ 2424331 (-)
G348640 NA non-coding upstream 485519 3150001 ~ 3150416 (-)
G348661 NA non-coding upstream 534200 3198682 ~ 3198896 (-)
G348663 NA non-coding upstream 539609 3204091 ~ 3205284 (-)
G348662 NA non-coding upstream 541023 3205505 ~ 3207834 (-)
G348669 NA non-coding upstream 558818 3223300 ~ 3223499 (-)
LOC113542580 NA other downstream 369967 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 473889 1982054 ~ 2127645 (-)
G348145 NA other downstream 603064 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 772889 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 890626 1450335 ~ 1710908 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 109240 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 120195 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 147062 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 491560 3156042 ~ 3166254 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other upstream 655303 3319785 ~ 3387730 (-)

Expression


Co-expression Network