G348296


Basic Information

Item Value
gene id G348296
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2549097 ~ 2594323 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412758
CCTGAACACTCACCTGATGCTCATTACTTCTTCATTTCCCCAGTTTTTATGTACCCTTCAGTTTCCAAGCACACTGGATGTGTGAAATAACTAGAATTTGGAATAAAATGGTTCTCCAAATCTCTAAAACTATACCACAAAATCTCTTTTTTACAAGCAATTGATCATGTGATTCTTTAGTTTGTGTCACTGATACCCTTTAATTAGAGGAAAGATTTGGGTTTGTGGAACAAATCCATAAACCCAAACCCACAAACCTgttttccaggttttttttttaaagagcaagAGGCGAGTTCATGCGTTATTCATAGCGCTAAGGGCCAGCTGTTCCTCTGAAGCCTCTTCTGAATCAGTCTCAAGGTGCCCGACCCTTTTCTCCTCTGCATGGGGTCATCATTTTAATTTGGATGgagaaggaaggaggaggaaaagaacCACTTCAGGTCTCCATGAAGAGAACAGACGGCTGTGACAGCATGATGATAATCAAGGTAACAAGCATGCAGAAAATAATTCTACTTCCTCCCGGAGTGCAGTGAATTTCAGCGTTTCAGAGATGAGCGCCAGGATGGAAGCTCCTCAAGAGATCTTTACTTCATTCATATTTGAATGccacttttttgttgttaatgcAGTTATTGTTGCAGTGTGGTGCTAAAATAAGTTTTGATCTGAATGAGTGGCGTTATTCTGGGGATAATCTTAAAGGATTAACTCAAGCATAAAGGGTAATTCCCTGCTGAAATCTATCATGGAAACCATGCTTCCTGATGGGTTTAGAATGGGTGGGACCAAGTCATCGTTTTGCGAGTCCCAAAGTCAGTCTCGAGTCCCAAAGTCAGTCTCGAGTCCCAAGGTCCGGCTCGAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412758 True 873 lncRNA 0.42 2 2549097 2594323

Neighbor

gene id symbol gene type direction distance location
LOC113542490 NA coding downstream 66914 2465572 ~ 2482183 (-)
LOC113542614 LOC108255713 coding downstream 90692 2435324 ~ 2458405 (-)
ogfod2 ogfod2 coding downstream 185942 2357271 ~ 2363155 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding downstream 266104 2252981 ~ 2282993 (-)
ncaph ncaph,LOC107709847 coding downstream 339356 2201716 ~ 2209741 (-)
sfrp1a sfrp1 coding upstream 106674 2700997 ~ 2712386 (-)
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding upstream 151824 2746147 ~ 2773403 (-)
zgc:153409 LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222 coding upstream 190238 2784561 ~ 2785074 (-)
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding upstream 191116 2785439 ~ 2785937 (-)
LOC113542230 LOC108255680 coding upstream 191926 2786249 ~ 2791574 (-)
G348311 NA non-coding downstream 87 2548123 ~ 2549010 (-)
G348310 NA non-coding downstream 1057 2546572 ~ 2548040 (-)
G348309 NA non-coding downstream 2582 2545415 ~ 2546515 (-)
G348283 NA non-coding downstream 124766 2423715 ~ 2424331 (-)
G348264 NA non-coding downstream 147604 2400857 ~ 2401493 (-)
G348640 NA non-coding upstream 555678 3150001 ~ 3150416 (-)
G348661 NA non-coding upstream 604359 3198682 ~ 3198896 (-)
G348663 NA non-coding upstream 609768 3204091 ~ 3205284 (-)
G348662 NA non-coding upstream 611182 3205505 ~ 3207834 (-)
G348669 NA non-coding upstream 628977 3223300 ~ 3223499 (-)
LOC113542580 NA other downstream 317530 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 421452 1982054 ~ 2127645 (-)
G348145 NA other downstream 550627 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 720452 1827898 ~ 1828645 (-)
LOC113542373 NA other downstream 1018703 1505639 ~ 1530394 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 7211 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 179399 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 190354 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 217221 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 561719 3156042 ~ 3166254 (-)

Expression


Co-expression Network