G348309


Basic Information

Item Value
gene id G348309
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2545415 ~ 2546515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412771
atttaggttattattattattttgtttttgtttcattcgGCAGATAAAGATCTCGGTCTCAATGCACACATCTAATCAATGTAAATCTTTCAGTCAAGAAAAAAACGAATAGCTCACCTCTTAGTCCTATCTGGATTTGTATTCGTTTATAACATATTGTTTATTTGATTACTGTAACCGTACTGGCTTATATTCAGTAaacgtgtttgtttgttttgttttgttttgttttttaactgaacTTTCGTAAATTTTGAGTGGCATACACCTTGCGTATGTCTGTTATTGCACCACAGGTACATTGTacacatcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatggctaTTGAAACCGAAGTGGATGAGTGTAAGGCCCGAGGGAAATCAGGTGAAGAGTTTCAGGTTTCAGAGTAAAAAGGATCCAGGAGAAGAACAAACAGCGACATGTATTCAGGGATTTTAGTTAAATTCCTTCCTAGTCTTTCTCACGCTGTGCTCCGACAATATCGACTCGAAAGGCCCGAATGACATCATGAGGGAAATCTATAGACCCTGACAACATGGATCCTCAAACACACAACCTACAGCAAGACACCATTTCAATTTCATGCTAGGACTATAGGCTTAATCTTGTTTACAATCTAATACAGAGAGATTATTTGATAAAATTGCTCATATTTAAGACATTTGAACTTGTTTAGAGGTTAAAGCCTTCAGGTTCTCTTGTATAAAATGTTTCCTCATTAATCCAGATGCAGATTGTTCCCAAATCTTCCTTCCTTTGTGCCATAACTCCTAAGAAAAAGCGTTTATTTGAGAGTGCACTCCGAATAAATTGTTGACTGTATAACGTATAATTAGAGATGGCGCAAtacataataatttttttctttctgctctgATATTGATCCTGATACTGAAAGTGATATCGATACCTGTTTTAAACACtgctaagctttaaaatgattttttttttaaacacctttttagcattttttttaaatagatagtTTGTGATCATAGTAGATAGTTTGGTAgctaaaaaaacagaaataaaaacagcagcagcaaataTAACCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412771 True 1101 lncRNA 0.35 1 2545415 2546515

Neighbor

gene id symbol gene type direction distance location
LOC113542490 NA coding downstream 63232 2465572 ~ 2482183 (-)
LOC113542614 LOC108255713 coding downstream 87010 2435324 ~ 2458405 (-)
ogfod2 ogfod2 coding downstream 182260 2357271 ~ 2363155 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding downstream 262422 2252981 ~ 2282993 (-)
ncaph ncaph,LOC107709847 coding downstream 335674 2201716 ~ 2209741 (-)
sfrp1a sfrp1 coding upstream 154482 2700997 ~ 2712386 (-)
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding upstream 199632 2746147 ~ 2773403 (-)
zgc:153409 LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222 coding upstream 238046 2784561 ~ 2785074 (-)
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding upstream 238924 2785439 ~ 2785937 (-)
LOC113542230 LOC108255680 coding upstream 239734 2786249 ~ 2791574 (-)
G348283 NA non-coding downstream 121084 2423715 ~ 2424331 (-)
G348264 NA non-coding downstream 143922 2400857 ~ 2401493 (-)
G348233 NA non-coding downstream 236811 2306125 ~ 2308604 (-)
LOC117595926 NA non-coding downstream 302599 2242208 ~ 2242816 (-)
G348180 NA non-coding downstream 363555 2111663 ~ 2181860 (-)
G348310 NA non-coding upstream 57 2546572 ~ 2548040 (-)
G348311 NA non-coding upstream 1608 2548123 ~ 2549010 (-)
G348296 NA non-coding upstream 2582 2549097 ~ 2594323 (-)
G348640 NA non-coding upstream 603486 3150001 ~ 3150416 (-)
G348661 NA non-coding upstream 652167 3198682 ~ 3198896 (-)
LOC113542580 NA other downstream 313848 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 417770 1982054 ~ 2127645 (-)
G348145 NA other downstream 546945 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 716770 1827898 ~ 1828645 (-)
LOC113542373 NA other downstream 1015021 1505639 ~ 1530394 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 55019 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 227207 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 238162 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 265029 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 609527 3156042 ~ 3166254 (-)

Expression


Co-expression Network