LOC113542231 (LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859)


Basic Information

Item Value
gene id LOC113542231
gene name LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2773722 ~ 2831679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412963
GTTTGTTGTTTCTCGAGAGCTCCTCCGCATTATGTGTCATTACAAGGATTTTACAAAACCCACGAGTCAAGTCATTAACCGTGGCGATATTAAACATATGTATCAGTATGTGAGAGGTTGTTTGCGGTATTAAAACCCGCACCTCCACTCTATCAGATATCCATTAAATCTGAGACCCCGTCAGGAGCAGCGTGGCCACTAATGGCTCCCTTTCATTCCTCGTTAAGTCTCGCAGGGATGAATCATCCGTCACTTTGAATAATGCACCTCATTACAGACCTGGaaacaaacaaacaacaaacaaacaagtctTTACACTAAAACTCCAACTGTACATGACATtctatgtgtgttatttttttccacatctctACCTaacctcattttattttttattttattattttatttgtaatagtCTGTGCCCATGTTAGTCCCATTTTTATCTCTGTAAATAAATCCTGATTGAAACTTCCTGTAAATAGCCAGGACAAagatgttaatttatttatttgtgtaacaATAACAGCTCTTCTGTAGTTGTGGTATAACATGtctcattttttcattcaaacttttaagcatttatgtaaaaaaaaaaacaaacaaacaaaaaacattttaatacaaaaagtCCAAATAAAACAAGTGCAAAAGCCaaagttgtttgtttgtgtagttatttacacactttattacaCTTTACTGAAGTTCGATGTTTATTAAAGCTGCAGCATCACGTCATGTTTCTGAGATCGTTAGTTACTTACTGTAGTCAGATATTCAAATATCAGAGGTACTAATGATGAATATTTCTTCTGGTATCTGAGTGTAACGTGATGTCTGTTGTGTCTGATCTCCACAGGCCAGAGATCAGACGAGATGGTTCTGATCACTTTGACGCAGCAGACACGCTGATGTAGGATTTAAAGGTCTAAAATAAGAAGACGTTCTTGTGAAACTGGTTCTTTCAGTGTTAGTGAACTCACTCAGGATCAATCAGGATCAAACATGTTCTTCAGCTCCACGtttcagaaatgtttctgtACTTCAACACTGTTACTGAACGCTTTCATTCCCACATCAACTGCCCCGACTCCAGTTCTGTTTTAACCTGAGTTCAATATTTCAGTTTA
>TU412967
tctctctctctctctctctctctctctctctctctctctctctctctctctttttttctttttttccccaaaatgtctTTAACTTTTATTGATACAAATTTGCGACAATagaaatgtttgttaaaaagaaactgggatttttatatgtgtgtgattcccaaaaacaaaaaaaaaaaacatccttgtGTAGTCCGTCCGCACTTCCGGTAGAGAAagtagtgttttgtttttgtttttgtttttgtttgttttttgttgttttttaaacgGAAGTGACGTAACGTTCACCTGAACAGTGATGGGATATTTGAATGGAAATATTGCTATTGATTTAATGGACtctgaaaacacaacacactgtcaCTACCTCTGCACACAACGCACAAATCCGATTAAGGCTTTGTGCAGCTTTTCCAAACCCTTTCCGAGCCGCTTACACCACAGAcctggaaacaaacaaacaaacaacaaacaaacaaacaaacaaa
>XM_026939603.2
GCTGTTCGACGTAAACATTGTCACTtcgtgcattttttaaaaaagtcttttaaaCGTTAACGATAAACTTCTGAACGGGTCTGATGGCAGAGACCGCGCCAGCTCCGGCAGCCTCCACGGCCAAAGCGCCGAAAAAGAAATCCGCCTCAAAGGCGAAGAAGTCCGGACCGAGCGTGTCAGACTTGATCCTGAAAGCCGTGTCCGCGTCCAACGAGCGCAAAGGCGTGTCTCTGGCGGCGCTGAAGAAAGCGCTCGCGGGCGGCGGATACGACGTAGAGAAGAACAACTCACGCGTCAAGCTCGCGCTCAAAGCGCTCGTTAAAAAGGGCTCGCTCGTGCAGACCAAAGGCACCGGAGCGTCCGGCTCGTTTAAAGTCAGCAAAGGCGGCGCGGTGAAGAAACCAGCCAAGAAGATTGAGGTCAAAGCCAAGAAGCCTGCGCCGAAAAAACCGGTGGCTAAAGCGGTAAAGCCTAAAAAAGCACCGGCTAAGAAACCTGCTGCTAAAAAAGCGCCTAAGAAAGTGAAGAAACCCGCAGCAGCTGCGGCTAAAAAGGCCACAAAGAGCCCGAAGAAGGCGAAGAAACCCGCGGCGAAGAAAGTGACCAAGAGCCCGAGCAAGAAGGTCAAAGCCGGGAAGCCCAAAGCAGCCAAACCCAAACCGGCCAAGGCGAAGAAGGCGGCTGCGaagaagaagtaaaaaaaaacttaaaaaacatCTATAATACCACCGAGTTGTCAGAGAAAGAGTTAAATTTTGGACTGAGCATGCGCAGAACTGATTATAATACGACTACGGGCTACAGGAGGAGTGGAAATGAGCTTAGAGACGAGATTATAAACAGCTGAACAAAAAGCGGCACACTGAACATTAGCCATGTTTCCATCCGGCTTTTTCACAGGagaaacactttcacattataCATGGTTTGTggatatttctctctctctctctctctctctctctctctctctctctctcttttttttctttttttccccaaaatgtctTTAACTTTTATTGATACAAATTTGCGACAATagaaatgtttgttaaaaagaaactgggatttttatatgtgtgtgattcccaaaaac

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412963 True 1136 lncRNA 0.36 2 2779837 2831679
TU412967 False 488 lncRNA 0.36 3 2773722 2801204
XM_026939603.2 False 1096 mRNA 0.48 1 2780987 2782082

Neighbor

gene id symbol gene type direction distance location
loxl2b loxl2b,LOC108255679,LOC108434263,LOC107673422,LOC107721556 coding downstream 319 2746147 ~ 2773403 (-)
sfrp1a sfrp1 coding downstream 61336 2700997 ~ 2712386 (-)
LOC113542490 NA coding downstream 291539 2465572 ~ 2482183 (-)
LOC113542614 LOC108255713 coding downstream 315317 2435324 ~ 2458405 (-)
ogfod2 ogfod2 coding downstream 410567 2357271 ~ 2363155 (-)
tbx3b tbx2a,LOC108255409 coding upstream 336599 3168278 ~ 3200058 (-)
araf araf,LOC108255753 coding upstream 397425 3229104 ~ 3242841 (-)
klf9 klf9 coding upstream 475489 3307168 ~ 3312856 (-)
cemip2 tmem2 coding upstream 679436 3511115 ~ 3546480 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding upstream 720840 3552519 ~ 3568775 (-)
G348296 NA non-coding downstream 179399 2549097 ~ 2594323 (-)
G348311 NA non-coding downstream 224712 2548123 ~ 2549010 (-)
G348310 NA non-coding downstream 225682 2546572 ~ 2548040 (-)
G348309 NA non-coding downstream 227207 2545415 ~ 2546515 (-)
G348283 NA non-coding downstream 349391 2423715 ~ 2424331 (-)
G348640 NA non-coding upstream 318322 3150001 ~ 3150416 (-)
G348661 NA non-coding upstream 367003 3198682 ~ 3198896 (-)
G348663 NA non-coding upstream 372412 3204091 ~ 3205284 (-)
G348662 NA non-coding upstream 373826 3205505 ~ 3207834 (-)
G348669 NA non-coding upstream 391621 3223300 ~ 3223499 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other downstream 109240 2601534 ~ 2664482 (-)
LOC113542580 NA other downstream 542155 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 646077 1982054 ~ 2127645 (-)
G348145 NA other downstream 775252 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 945077 1827898 ~ 1828645 (-)
tm2d2 tm2d2 other upstream 324363 3156042 ~ 3166254 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other upstream 488106 3319785 ~ 3387730 (-)
trpm6 LOC108255945,LOC108438703 other upstream 1000406 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 1050337 3882016 ~ 4204104 (-)
G349584 ung other upstream 1707604 4539283 ~ 4539831 (-)

Expression


Co-expression Network