G348662


Basic Information

Item Value
gene id G348662
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3205505 ~ 3207834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU413169
TGTCTTATAATCCTTTATTTAGAATATTCTAACAAATATTAGGACAAAATTATGTGACAACtgttatgaaaatgaaatatcagtGTCTAAATTGTTCATCCAGCAGCTTCTGAAATCACTGATCTGTTGACAACAGCAAGTTATAAAAGCAAGATAATTAAAATTTGAGTTAGGTCCGGTCCAAGTTTGCCACCaagaacaatttttatttaatcagttatttACCCCAAATACAGTTTTTTGGTCAAATGACATTTCTCAGACATTCAGCATTTCCGTGATTTCAAAATAAGACATTGAATTAGAGCGCTAATGTGGGTAAGTTTGACGAATTTAATATTCTATATAAAGTTcaatatgtaattaaattatgGATGTTTCCATTAAAGACCCCTTTGATCCAGCAAATCCTACACAACACCCTTCATAACAAAACCATGCAAAAGTATAGTACAAGCCAATATTATTTCCAATTagcaaagagaaaaataaattccGCGTGCTCAGGTTTTCCGTTCAGTGAGTAATTGATTTTAACAGTGCATTTGAAAGGAAAATCAGATTACGGTGTGTGAGCATGACAACCAGCcaaaataacaggaaataaaatctaattcaaataaaaattcaaataaagcaccaaaattaaaacaagggaaaaaaagcatttttatattaaatttatagaAATTTTTGAGCAGAAAATTGTTTCAAGCtattatttttaacagcatTTTCCCACTTAATCActgagctgtgattggttgattttaAAGAGTTTGTGTAAACAAAAACTAAACGAGTATGACTCTGGAGAATTCAGTGCATTATTATtcacagactaaaaaaaaaaaaaattaacctaaTAAACCCCAAAAGATTGCTACTTGTATTCCTTTtcgatcttttttttttttttttattataataaaccgTTTTTTTTGCCTACTCTTTACGGCTTGAAAGGCAGAAAGGGCAAGTTTAGTATGTGCTACTGAAACATGACCACCAGTTAAACGTGTATAAGTCGAAGTTGTTACGAATCAGTGAacagttttgttcatttaacactATTCTTTCCATCCAGCACATCGAACATAACATAGCAATGAGATTTCTGTCTGCTTAAACCTTTGTTTGatgtattttgtgtaaaatcGTACAAAGTATaatgacctttaaaaaaaaaaaaaaaaattctaaagagTATTTCACATATATGCATATGCACCCACGCATACACTTCTTTATAGTTCAGCTTGTTGTTAAtgtcaggctgtgtgtgtgtgtgcaaatttaTAGACATCCTTGTTAAAGACCTCAAAACCTGATTCGATTCTATACGCAGCACCATCAAGTCACTctctaaaataaatgaagtggGCAAAAATACCGAAGCGCGTCATGTTTCCCTCTAACAAAACTCATTCGTGTGTGAAACGCGTGCGTAAGGCTCCGAGAAACTTTTCTCGAGCACTTCTTGAAGAAGAATTAGCCAAGTTTGTGTTCGAATCCGATTTTTCCTACAAATGTGAACTggattcattaattattttacaactAAATTTATgactgtgatttattttttgcatcttttatcaaaaatgtcttgttaaaaaacaatttcatgtagaaaaacaaaaacaaaatgagagagaaaaaaaaaaaaagaccttctCTCTGATGTGTATGCTTCACTAGTGCAGATAAAGCTACCTATCTTGGTCTGTAATATGTATGTCCAAATCGGGAACAgatctcaaacacactcacactcgcaCGTACTCGcttgcgcgcacacacacacacacacacacacacacactcatattacATCATAAGCAATGCTGTCTATCTAGGTCTGTAATATGTATATGCAGTTCAGGATCAAATCTGTGTCTTGCACTTGCACTtgcacttgcacacacacacacacacacacacttgcacgcACTCTGGCACTTTGTTCTTTCCGCAGCAACATTCAAATATCTTATACACTTTAGTAGATGAATGAGAGGATCAGGACGAAGCCGTTTTCTCTCTCGTATGGCTCTTCGGTGTCGGAGGTAACGTCAGTTAGATGCAGCAGTGAGAAGAAACTTCGGAACGCAAAAACGCTCTCCGTTTCCCTCAATAGAAGCGCTTGCGGCTGCGCTCCTTCCAGCGTGCGTAGATGAAGAGAAACGCCACGACGAACACCACGAGGCCGACCACAGAGAAGATGAACAGGAAGATGAGGGTGAGCGTGCTCATGCCTTCATCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU413169 True 2268 lncRNA 0.36 2 3205505 3207834

Neighbor

gene id symbol gene type direction distance location
tbx3b tbx2a,LOC108255409 coding downstream 5447 3168278 ~ 3200058 (-)
hdr NA coding downstream 403951 2793455 ~ 2801554 (-)
LOC113542230 LOC108255680 coding downstream 413931 2786249 ~ 2791574 (-)
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding downstream 419568 2785439 ~ 2785937 (-)
zgc:153409 LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222 coding downstream 420431 2784561 ~ 2785074 (-)
araf araf,LOC108255753 coding upstream 21270 3229104 ~ 3242841 (-)
klf9 klf9 coding upstream 99334 3307168 ~ 3312856 (-)
cemip2 tmem2 coding upstream 303281 3511115 ~ 3546480 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding upstream 344685 3552519 ~ 3568775 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding upstream 457138 3664972 ~ 3673856 (-)
G348663 NA non-coding downstream 221 3204091 ~ 3205284 (-)
G348661 NA non-coding downstream 6609 3198682 ~ 3198896 (-)
G348640 NA non-coding downstream 55089 3150001 ~ 3150416 (-)
G348296 NA non-coding downstream 611182 2549097 ~ 2594323 (-)
G348311 NA non-coding downstream 656495 2548123 ~ 2549010 (-)
G348669 NA non-coding upstream 15466 3223300 ~ 3223499 (-)
G348678 NA non-coding upstream 48276 3256110 ~ 3259052 (-)
G348681 NA non-coding upstream 54435 3262269 ~ 3264822 (-)
G348695 NA non-coding upstream 107540 3315374 ~ 3315944 (-)
G348906 NA non-coding upstream 342743 3550577 ~ 3551672 (-)
tm2d2 tm2d2 other downstream 39251 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 240616 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 373826 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other downstream 419609 2784677 ~ 2785896 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other downstream 541023 2601534 ~ 2664482 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other upstream 111951 3319785 ~ 3387730 (-)
trpm6 LOC108255945,LOC108438703 other upstream 624251 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 674182 3882016 ~ 4204104 (-)
G349584 ung other upstream 1331449 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 2040814 5248648 ~ 5327552 (-)

Expression


Co-expression Network