G348663


Basic Information

Item Value
gene id G348663
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3204091 ~ 3205284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU413170
TCAGCTGCTCGATGTTACTGCTTCATCAGCATCTTAAAATAGGGTGAAACTGTTGTGCTGagtttcatttccatttttttttaatctctggttaaattaaaaattcatgGGAACTCAACACAGATAGGGCCTGTCTCGATAGGGGAAGTCTCGCACCACCCCACGTGTTAAAACGTCACTAACTAGCTTtacttatcctacacagtgtTAAGGTTTGTTACCGGGAATCTCTCGGTAGTCCACACTGGGTATCGTGACCTCCTGCTCGTTCTCCAGTTCCTCAAGAGTTCTCTCCACCGTCAGCTCAAACAGCTTGAGGGAGATCAGGTCATGGTTATCTGCCATCAGACAACAATCAGACATCACAGAGTAGATTATGAAGTGAATCGAAGCAATTGGACAGATAATTAGCCAATTTGATATGGTGGACTGAATCGGTGGAGTGAATCAGACAGTGGAGTGAATTAGTGGAGTGAATCAGACAGTAGAGTGAATCAGTGGAGTGAATCAGACAGTGCCAATAAAGGGAAATGAATCTGGCCCTGTCATCATGGTGGACTGAATCAAATAGTCAGTGAAATCAACGTGGATTGAATCAGACAATGCCAAAACTATGGACAGGATCAGACACTGCAAACACATTGGGCTGAATCAGACAGTGTCAACACAGCACAGTGGACTGAATCAAACAGTGTCAACACAGTGGACTGAATCAGACACCGCAAACACGGTGGACTGAATCAGACGGCGTCAACACTGAGGACTGAAACAGACGGCATCAACACTGTGGATTGAAACAGACGGCATCAACACTGTGGATTGAAACAGACACCACAAACACTGTGGGCTAAATCAGACACCACAAGCACCATGGGCTAAATCAGACATTGCCACTTTTGACCActggggaagtggtagctcagttcTATGTTGTGGTAGCTCAGTTTCTGTGGCatatgcagaaaaataaaatcattaacgTATCATTTTAGAGCAATTTAAAGAAATCGTCTATCCAAACCTGACAGATCGCCAGTAAGCGATGAGGCTCCGAAGTAATACCCTTGAGGAAGGTGGACACCCGGGATCTCCAAGCACTCCTTCCACTCCTGCTTTCCTTCTACGTCCATCAT
>TU413171
TCAGCTGCTCGATGTTACTGCTTCATCAGCATCTTAAAATAGGGTGAAACTGTTGTGCTGagtttcatttccatttttttttaatctctggttaaattaaaaattcatgGGAACTCAACACAGATAGGGCCTGTCTCGATAGGGGAAGTCTCGCACCACCCCACGTGTTAAAACGTCACTAACTAGCTTtacttatcctacacagtgtTAAGGTTTGTTACCGGGAATCTCTCGGTAGTCCACACTGGGTATCGTGACCTCCTGCTCGTTCTCCAGTTCCTCAAGAGTTCTCTCCACCGTCAGCTCAAACAGCTTGAGGGAGATCAGGTCATGGTTATCTGCCATCAGACAACAATCAGACATCACAGAGTAGATTATGAAGTGAATCGAAGCAATTGGACAGATAATTAGCCAATTTGATATGGTGGACTGAATCGGTGGAGTGAATCAGACAGTGGAGTGAATTAGTGGAGTGAATCAGACAGTAGAGTGAATCAGTGGAGTGAATCAGACAGTGCCAATAAAGGGAAATGAATCTGGCCCTGTCATCATGGTGGACTGAATCAAATAGTCAGTGAAATCAACGTGGATTGAATCAGACAATGCCAAAACTATGGACAGGATCAGACACTGCAAACACATTGGGCTGAATCAGACAGTGTCAACACAGCACAGTGGACTGAATCAAACAGTGTCAACACGGTGGACTGAATCAGACACCGCAAACACGGTGGACTGAATCAGACGGCGTCAACACTGAGGACTGAAACAGACGGCATCAACACTGTGGATTGAAACAGACGGCATCAACACTGTGGATTGAAACAGACACCACAAACACTGTGGGCTAAATCAGACACCACAAGCACCATGGGCTAAATCAGACATTGCCACTTTTGACCActggggaagtggtagctcagttcTATGTTGTGGTAGCTCAGTTTCTGTGGCatatgcagaaaaataaaatcattaacgTATCATTTTAGAGCAATTTAAAGAAATCGTCTATCCAAACCTGACAGATCGCCAGTAAGCGATGAGGCTCCGAAGTAATACCCTTGAGGAAGGTGGACACCCGGGATCTCCAAGCACTCCTTCCACTCCTGCTTTCCTTCTACGTCCATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU413170 True 1133 lncRNA 0.45 2 3204091 3205284
TU413171 False 1133 lncRNA 0.45 2 3204091 3205284

Neighbor

gene id symbol gene type direction distance location
tbx3b tbx2a,LOC108255409 coding downstream 4033 3168278 ~ 3200058 (-)
hdr NA coding downstream 402537 2793455 ~ 2801554 (-)
LOC113542230 LOC108255680 coding downstream 412517 2786249 ~ 2791574 (-)
LOC113542232 LOC108255682,LOC108434266,LOC108417841,LOC108415785,LOC107715185,LOC107581013,LOC107745493 coding downstream 418154 2785439 ~ 2785937 (-)
zgc:153409 LOC106958509,LOC106963510,LOC107723971,LOC107690788,LOC107671222 coding downstream 419017 2784561 ~ 2785074 (-)
araf araf,LOC108255753 coding upstream 23820 3229104 ~ 3242841 (-)
klf9 klf9 coding upstream 101884 3307168 ~ 3312856 (-)
cemip2 tmem2 coding upstream 305831 3511115 ~ 3546480 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding upstream 347235 3552519 ~ 3568775 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding upstream 459688 3664972 ~ 3673856 (-)
G348661 NA non-coding downstream 5195 3198682 ~ 3198896 (-)
G348640 NA non-coding downstream 53675 3150001 ~ 3150416 (-)
G348296 NA non-coding downstream 609768 2549097 ~ 2594323 (-)
G348311 NA non-coding downstream 655081 2548123 ~ 2549010 (-)
G348310 NA non-coding downstream 656051 2546572 ~ 2548040 (-)
G348662 NA non-coding upstream 221 3205505 ~ 3207834 (-)
G348669 NA non-coding upstream 18016 3223300 ~ 3223499 (-)
G348678 NA non-coding upstream 50826 3256110 ~ 3259052 (-)
G348681 NA non-coding upstream 56985 3262269 ~ 3264822 (-)
G348695 NA non-coding upstream 110090 3315374 ~ 3315944 (-)
tm2d2 tm2d2 other downstream 37837 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 239202 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 372412 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other downstream 418195 2784677 ~ 2785896 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other downstream 539609 2601534 ~ 2664482 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other upstream 114501 3319785 ~ 3387730 (-)
trpm6 LOC108255945,LOC108438703 other upstream 626801 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 676732 3882016 ~ 4204104 (-)
G349584 ung other upstream 1333999 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 2043364 5248648 ~ 5327552 (-)

Expression


Co-expression Network