G348909


Basic Information

Item Value
gene id G348909
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3615071 ~ 3616581 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU413447
GGGgttttttattctgtacatttttatttacaatactattttttgcattaatggcAAGTAAAAGGATTAAATgcaatacataaatatgaacagGTTTTCTTTTGTACAAATTTGCATATAACTAATAGCTGAAATTAAAACTCAAAACAGATACATACGGTTTTGTCACTCCCGGAGCCAttagagaaaacacacacactcatatacacacacacacacacatacacacacacacacacggaaagaGAAGCTCAGTTATGGGTGGCAGCGCTCACACTCACATTTAACAAAACACTGATCCTTTTGTCGAGCTTCAAACGTCCAAACGTAACTGACTCAGAAAGgattgcttctctctctctctcacacattctctctctcacgtacacacattcacaaacaccaAATAAATGCCTAAATAACTGCACTCGAAtgataaaacaacaaacacaaccCCATAGTATCTGTTATAATAATGGCCGCACGGCTGTGAGCTCGTGTGCTGTGAAAGAAGCTAGAACGACAACACTGACGCCTTCGGATCAACATCCACCAGTGGGTCACAGTAGTATGTTCACATTATGAAACtgtcatgggggaaaaaagatgaaTGATTGATGACCGACAGGCAGCCTAGGTGGAAAATCTATCTGTTTGACCTTTACTGAATAGGCTTGAGTGGAACATCAAGGAAgaaaataagatataaaattGTCTACTAATCCTGACTGGAAGAAAACAGTTGCAGaacaacgaaaaaaaaaaaaaaaaattaataccTAGAACCAAACGGTAATTAATGCATGGGCGTCACACAGCACGGTTGTTTTTCCCCTCCGCCTTCTTTCTCGTAATAGAAAAACACAAGTCTGTTTATCCGTTATCCGTTATCCGATTTAGCTCAATACTTCTTCTCTTTCCATGCTTTATGCTTTGCTTTATATTCTCTGGATCTTGTCGGCCACCACCACAGGGTTTTCTTTGCGGATTTTGGCGGCCGCCTCGGCTTTGTAGTCGTATGTGCAGTTGTGTTTGTCCGAGTAGCGATGGATGCCGCAGAAGAGCTGGCCGCATCTACAGTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU413447 True 1085 lncRNA 0.40 2 3615071 3616581

Neighbor

gene id symbol gene type direction distance location
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding downstream 46296 3552519 ~ 3568775 (-)
cemip2 tmem2 coding downstream 68591 3511115 ~ 3546480 (-)
klf9 klf9 coding downstream 302215 3307168 ~ 3312856 (-)
araf araf,LOC108255753 coding downstream 372230 3229104 ~ 3242841 (-)
tbx3b tbx2a,LOC108255409 coding downstream 415013 3168278 ~ 3200058 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding upstream 48391 3664972 ~ 3673856 (-)
wu:fa19b12 NA coding upstream 258301 3874882 ~ 3879761 (-)
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding upstream 374326 3990907 ~ 3993684 (-)
LOC113542541 LOC108255813,LOC108255349 coding upstream 377165 3993746 ~ 3997416 (-)
LOC113542443 NA coding upstream 413852 4030433 ~ 4032187 (-)
LOC117595903 NA non-coding downstream 7695 3561666 ~ 3607376 (-)
G348906 NA non-coding downstream 63399 3550577 ~ 3551672 (-)
G348695 NA non-coding downstream 299127 3315374 ~ 3315944 (-)
G348681 NA non-coding downstream 350249 3262269 ~ 3264822 (-)
G348678 NA non-coding downstream 356019 3256110 ~ 3259052 (-)
LOC117595902 LOC108255364 non-coding upstream 65999 3682580 ~ 3685306 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding upstream 78897 3695478 ~ 3697524 (-)
G349333 NA non-coding upstream 101658 3718239 ~ 3722019 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 847593 4464174 ~ 4512012 (-)
G349655 NA non-coding upstream 1086812 4703393 ~ 4704166 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 227341 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 448817 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 650182 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 783392 2773722 ~ 2831679 (-)
trpm6 LOC108255945,LOC108438703 other upstream 215504 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 265435 3882016 ~ 4204104 (-)
G349584 ung other upstream 922702 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1632067 5248648 ~ 5327552 (-)
G349951 NA other upstream 1704932 5321513 ~ 5364282 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030089 zfand5a coding NC_007116.7 CM002889.2 25680842 ~ 25694362 (+)
grasscarp (Ctenopharyngodon idella) G483045 NA non-coding CI01000339 null 3143105 ~ 3145400 (-)