LOC117595903


Basic Information

Item Value
gene id LOC117595903
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3561666 ~ 3607376 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU413448
TAACGACTTCCTGCGCATGCGCTGTCTCCTTTCCTCTGAAAAGAGTCGGCAACGCTGGTGCACTCGCGTATCGTGACTACCGTGATGCCACATTTTTGGTCGACTCGCCCACCCGTAACACGAAATGGTGCCTGTGAACGGCGATAAGGGGGCATGTCATACCACACTAGAGTTTCACATCTGAGAGTTCACACTGACCTCAGTTCCACGCACTGTGTGTGAAATCTGAATACATGGAAGAGAACATGGAAGTATTGGAACGTGGCCAGCGGGTTCATCTGTCATCATAAGCACAGCTCGATGATCTTTCTGGCACACGGTCAGGGTCCCTACAAAATGTCACATCAACTCGacgtgtggtttttttttagacacttcacattttatgttttaagaCCAAGAAGAGACCAACACCACACATGGCCATGTCCATGTCAAGACCAGACGCTCAGATGTGTTAATTTGCTGGTTGTAGTACCGTCCTAACTTGACATGAAATTTCTCTTGAATTAactaaacatttgttttttactgTAACCTTACAAAGTACAGATATTACAATGTTCTATATGTAATATGGAACATTGGTCTTGTCATAAACCCGGGTGAAATTTTACTCAGTCTTGTCTCAGCCAACAAAGTACAATATTTAGAGTCTTTAGAGCCGAGACAGAGCAACATTTCACCCGAGTTTACAACAACACCGAGACCAATGTTTTGTACCACAGTactacatttttatacattaatcatttcattctatatgtaatttttatacatgaatcatttattttcaagtgattttatacataatttttcacatgattttgtACATAAATGTTCACGTGTTCATTTaaatacatgattcattttcttttcatgtaattttttcaTATATGATTTTTACACTATTCATCTTTCCACTTCTTTTGCGTGTGGTTTCATTTTCCACATATGATTTTTgttcataatttattttcacattttatttttttaatggaggcattatgtttttgggACGTCCATGCATCCCTCCGTCTGAGATTCTCCTTAATGCAAAGACCGAATGGTTGAATGTTTGCaggatttatatataattataattctaaccagcagatgaactgaacAGCTAGACCTGGACACACTGTTGGACTGAAAGGCTCAGATGAAAACAGTAAATGCGGCCTCTCATCCAAAACACAGACCCTTTCTAAGTTGCGCTGTGGGCATAGTGTGACTTTCAGAAGCTGTTTAATTACAGCGCTGAGAGGAATCAGCCACCACTCTTAAAACACAAAGCAGGGTTTttagctgtctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagcatgGAAAAAGTGGTCCTAATCCtgtgcattttaacattttaactgcCTCCTCAACCACAAGCAGAGAAGCCTGATACACAAACGTCAGATTGAAAGATAACACGTGCATCTTTTTCCACGGCCTGTGCCAAAAATGGCCTATCATTTGACAAAACCAAGTGGTCATGTCTGGTTTAGGATTACCAACCAAAGCAGATTTGTCTAGCTGAAATATAGCATGTTAGCGCCCCCTGTGGCTGATTTTCTAAATTTGCAGTCATTTGCAGAATTCCAGTGCTGCAGTAAGTCACCTGCACATGGCAGACTTGTACCGCTTGTCACACACAGCAGGATCAGGTGCAACAGAAAGCTATGAGaggatgaaatgtgtgtgtggattttacAGAATTCACAAAGCAAGCCATTGCTGACTATTTTGTAGTTTAAGCTTCTGGTTGTTGTTGTGGACATATTTGGAATAGGAGTTTATACCCTACAGTGAGTGCAGTGAGTGCTGAGTCAAATGGGACTGACTTATTGATCATTCATCCTTAAGTTGGTTGTATATGACAGTGCTTCATTGTTTGCGCACTGCCTTTTACTTTTAGTGCCAAATTACTGAGACAAAATAGAAAACACAGtaaaatgttacttttatttcttatgaGCAGTGagtacagttaaaaaaaaaaaaaaaaaaactacccataaataaaaaatcacaagATGTGTGCACCACTTTAACATCTCATGGTTGGCGGTGATCTGGTTTGAGGAAGGTTCTAGAAAAATTACTAAAAGTCAGGGAAAGGCACCACTTGTTTACCGGCCACGTAGACCTCGACAATGTTCCGATCATCCCCTGTAACATCAACATGTAGACACACAGGAGAGTTTAGCATTCGAAATCAAACTGTAAACTCATCAAAACTTAAATATGTGAATGCATCTTACAAAACAACTAATGGAACCAATAGCCTTGACTCATAGTTTGGcattaattattcaaaaatgCATCTAGCAATAAATGTAGTATCTCTGATAATGTTTGGATCTATAATATTATCACGTAATTAGATTAGGCTTTAATTGTTGACTCAGTTATTTTTACATGAGTCAGttaaattgtttataaaatacacttattaagtaaatataatatacaagaTAATATACAAGACTAAATGTCTTACCCAGATTTAgaaatttctccaaaataacCTAAAAACAAGCACAACAAAAATGATCCCATTAgttgcagagaagcagctgtTCCATTTATCACTCTAACAACCACATATTTACTCTAGTTGTACTTCTCAAGTGTGTGGCCTGgtttttcctgctctctctACCTAAATTGTGTGAATCATAATATAAGGCACAATGTGGCatgccattataggaaaataatcaacaagatGTGATATGATTAAGCAGAaatactgttaccaccctgaagttgattatttttctgtaacagcacattttaatgtgtttattcttatactgcagcaatttgcaaatgattacaattttttatttattagagaaaGACACGTCAGGTTTTATACGCGTTTATAGTTGGAGTTAACGTCAGGAATGtccacaagttagttcctgttgtcacttaggttgtagcagctagaaacagttgTACATCCATGACCTCATTACAAAAAGCAGCTGATCGGCTTGTCAAGATTTTCCCATTTTGGAAAAGTTAAAGCTTTATCTCTAAGCGTTACAAGGTGCTGACACttcttttcaaaaatgttgcatgaacgtctcctcagagaaaacttcaccatatctaccatttctgcatgtttttaaaacatgtttatgtggagcgttcaCCATCCATCTGCCATTTATCAACACCTTCggaccaatcacattcaagaaatcaacagcgctgtggtgtaaaaccCAAATAACATAGTTTAAAGTTTTTATAGATAATTTTCATGAGCATCTATCTCTATCTACAACATTTCTGTAAGTCGCTATGGATAAGGTCATCTGCTAAATTCTGTAAATGCTGTTTGGTTTAACATAAGCAAATAAAGTTGTATAGTATTTTTTGTAGTATACAAAACAAATACTCTGATCCTGTTCTAACATTTTGAAAGCACAATATTTTCTCTACACATTAGTAAGCTTTGATAATGTTTATACACCACATTTATAAAGCCAGAACATGTAACATGTATAAAGAAAACTGGTCAAAGCAGTGTTTATGTCAGAGCAGGTCAAACCTCAGGCTCATCTCCAGGAAACAAATCAATCGGGCTTCCAGGAACGCATATGTTCACACGCAGGGCATCAAAGTCCTTTCCCACCTCAAAGTTTCCAGTGCGATCATCCAAGG
>TU413450
TAACGACTTCCTGCGCATGCGCTGTCTCCTTTCCTCTGAAAAGAGTCGGCAACGCTGGTGCACTCGCGTATCGTGACTACCGTGATGCCACATTTTTGGTCGACTCGCCCACCCGTAACACGAAATGGTGCCTGTGAACGGCGATAAGGGGGCATGTCATACCACACTAGAGTTTCACATCTGAGAGTTCACACTGACCTCAGTTCCACGCACTGTGTGTGAAATCTGAATACATGGAAGAGAACATGGAAGTATTGGAACGTGGCCAGCGGGTTCATCTGTCATCATAAGCACAGCTCGATGATCTTTCTGGCACACGGTCAGGGTCCCTACAAAATGTCACATCAACTCGacgtgtggtttttttttagacacttcacattttatgttttaagaCCAAGAAGAGACCAACACCACACATGGCCATGTCCATGTCAAGACCAGACGCTCAGATGTGTTAATTTGCTGGTTGTAGTACCGTCCTAACTTGACATGAAATTTCTCTTGAATTAactaaacatttgttttttactgTAACCTTACAAAGTACAGATATTACAATGTTCTATATGTAATATGGAACATTGGTCTTGTCATAAACCCGGGTGAAATTTTACTCAGTCTTGTCTCAGCCAACAAAGTACAATATTTAGAGTCTTTAGAGCCGAGACAGAGCAACATTTCACCCGAGTTTACAACAACACCGAGACCAATGTTTTGTACCACAGTactacatttttatacattaatcatttcattctatatgtaatttttatacatgaatcatttattttcaagtgattttatacataatttttcacatgattttgtACATAAATGTTCACGTGTTCATTTaaatacatgattcattttcttttcatgtaattttttcaTATATGATTTTTACACTATTCATCTTTCCACTTCTTTTGCGTGTGGTTTCATTTTCCACATATGATTTTTgttcataatttattttcacattttatttttttaatggaggcattatgtttttgggACGTCCATGCATCCCTCCGTCTGAGATTCTCCTTAATGCAAAGACCGAATGGTTGAATGTTTGCaggatttatatataattataattctaaccagcagatgaactgaacAGCTAGACCTGGACACACTGTTGGACTGAAAGGCTCAGATGAAAACAGTAAATGCGGCCTCTCATCCAAAACACAGACCCTTTCTAAGTTGCGCTGTGGGCATAGTGTGACTTTCAGAAGCTGTTTAATTACAGCGCTGAGAGGAATCAGCCACCACTCTTAAAACACAAAGCAGGGTTTttagctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg
>XR_004577093.1
ACTTCCTGCGCATGCGCTGTCTCCTTTCCTCTGAAAAGAGTCGGCAACGCTGGTGCACTCGCGTATCGTGACTACCGTGATGCCACATTTTTGGTCGACTCGCCCACCCGTAACACGAAATGGTGCCTGTGAACGGCGATAAGGGGGCATGTCATACCACACTAGAGTTTCACATCTGAGAGTTCACACTGACCTCAGTTCCACGCACTGTGTGTGAAATCTGAATACATGGAAGAGAACATGGAAGTATTGGAACGTGGCCAGCGGGTTCATCTGTCATCATAAGCACAGCTCGATGATCTTTCTGGCACACGGTCAGGGTCCCTACAAAATGTCACATCAACTCGacgtgtggtttttttttagacacttcacattttatgttttaagaCCAAGAAGAGACCAACACCACACATGGCCATGTCCATGTCAAGACCAGACGCTCAGATGTGTTAATTTGCTGGTTGTAGTACCGTCCTAACTTGACATGAAATTTCTCTTGAATTAactaaacatttgttttttactgTAACCTTACAAAGTACAGATATTACAATGTTCTATATGTAATATGGAACATTGGTCTTGTCATAAACCCGGGTGAAATTTTACTCAGTCTTGTCTCAGCCAACAAAGTACAATATTTAGAGTCTTTAGAGCCGAGACAGAGCAACATTTCACCCGAGTTTACAACAACACCGAGACCAATGTTTTGTACCACAGTactacatttttatacattaatcatttcattctatatgtaatttttatacatgaatcatttattttcaagtgattttatacataatttttcacatgattttgtACATAAATGTTCACGTGTTCATTTaaatacatgattcattttcttttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU413448 True 3746 lncRNA 0.37 2 3596793 3607376
TU413450 False 1383 lncRNA 0.40 3 3561666 3607376
XR_004577093.1 False 875 lncRNA 0.40 2 3599659 3607371

Neighbor

gene id symbol gene type direction distance location
cemip2 tmem2 coding downstream 15186 3511115 ~ 3546480 (-)
klf9 klf9 coding downstream 248810 3307168 ~ 3312856 (-)
araf araf,LOC108255753 coding downstream 318825 3229104 ~ 3242841 (-)
tbx3b tbx2a,LOC108255409 coding downstream 361608 3168278 ~ 3200058 (-)
hdr NA coding downstream 760112 2793455 ~ 2801554 (-)
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding upstream 57596 3664972 ~ 3673856 (-)
wu:fa19b12 NA coding upstream 267506 3874882 ~ 3879761 (-)
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding upstream 383531 3990907 ~ 3993684 (-)
LOC113542541 LOC108255813,LOC108255349 coding upstream 386370 3993746 ~ 3997416 (-)
LOC113542443 NA coding upstream 423057 4030433 ~ 4032187 (-)
G348906 NA non-coding downstream 9994 3550577 ~ 3551672 (-)
G348695 NA non-coding downstream 245722 3315374 ~ 3315944 (-)
G348681 NA non-coding downstream 296844 3262269 ~ 3264822 (-)
G348678 NA non-coding downstream 302614 3256110 ~ 3259052 (-)
G348669 NA non-coding downstream 338167 3223300 ~ 3223499 (-)
G348909 NA non-coding upstream 7695 3615071 ~ 3616581 (-)
LOC117595902 LOC108255364 non-coding upstream 75204 3682580 ~ 3685306 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding upstream 88102 3695478 ~ 3697524 (-)
G349333 NA non-coding upstream 110863 3718239 ~ 3722019 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 856798 4464174 ~ 4512012 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 173936 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 395412 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 596777 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 729987 2773722 ~ 2831679 (-)
trpm6 LOC108255945,LOC108438703 other upstream 224709 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 274640 3882016 ~ 4204104 (-)
G349584 ung other upstream 931907 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1641272 5248648 ~ 5327552 (-)
G349951 NA other upstream 1714137 5321513 ~ 5364282 (-)

Expression


Co-expression Network