G349325 (anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481)


Basic Information

Item Value
gene id G349325
gene name anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3695478 ~ 3697524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU413943
CAGACACACATGAATGGCACTCAAAGAAATCTCATTCTTTAATCACAAATGCACTTGATGACATCACTTAATTATCCCATTTTATTTGGCAGCATAACacttcctaaaaaaaaagagaaaaaaaaaaaaatgatatcttcaTGATGAACCGAAACGGGCGTCGCAGTTTACTGATCACTTCCACACAACGCCAGCAGGATCTTCTCGTAGTCGCCCTTGGTGTCGTCCAGAATGTCCCTGTAGAGAGTCTTGCCGTATTTCTTCTTGTATTCATTCTTGATCTGCACCATGTCAATCTCCGAGCGGCTCACCATGATGCGGGTCAGGATCTTCCCTTTGTAGCCAGAGCCCTTCATTGCCAGGTTGAGTTTTTCAGCAAAGTAAGCAGGTTTACTTCCAGCACATTTCACTAGCAGagacacaaaaaacagaaatgattccCTCATATACGTGGGCTGCTATTTACAAAGCATCGGCATGTCGATCTAGATTTTCCATAATAAATGTGAACACAGAACATTATGATCAATGGCCAACCACGTAATCAACAATTCATATCTTCAAGAATATTCTCATTAATCTCCAATTTGcaggaatttttttatttcttctttacgAAGAACTGATTGATATATGGCAGAAACATGTTGATCTGTTGATCTTGAATCCTCACTGGGGTGTAATCAACaagatctgtttttttgtcctgaTGCATAATAGAAACACATTGCAACACACATTGCACATTGCAACACATCATTCTTGTCATATTTTTGCTGCTGAAAGCCAACAGACATGTCAGGGAGTGGCAAACGAGGGACGGAAAAGGGAAACAAAACCTCAAATGAACTTTATAACACAACAGAAAGATGAACACTTTTGTCCAAACTTGTGGACAACCTGCTCA

Function

symbol description
anxa1 Enables calcium-dependent phospholipid binding activity; calcium-dependent protein binding activity; and phospholipase A2 inhibitor activity. Involved in several processes, including leukocyte chemotaxis; regulation of T cell activation; and regulation of vesicle-mediated transport. Located in several cellular components, including cornified envelope; endosome; and extracellular exosome. Is extrinsic component of external side of plasma membrane. Colocalizes with actin filament. Implicated in brain ischemia and pancreatic cancer. Biomarker of several diseases, including dry eye syndrome; ductal carcinoma in situ; invasive ductal carcinoma; keratosis (multiple); and paranasal sinus benign neoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU413943 True 907 lncRNA 0.39 3 3695478 3697524

Neighbor

gene id symbol gene type direction distance location
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding downstream 21622 3664972 ~ 3673856 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding downstream 126703 3552519 ~ 3568775 (-)
cemip2 tmem2 coding downstream 148998 3511115 ~ 3546480 (-)
klf9 klf9 coding downstream 382622 3307168 ~ 3312856 (-)
araf araf,LOC108255753 coding downstream 452637 3229104 ~ 3242841 (-)
wu:fa19b12 NA coding upstream 177358 3874882 ~ 3879761 (-)
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding upstream 293383 3990907 ~ 3993684 (-)
LOC113542541 LOC108255813,LOC108255349 coding upstream 296222 3993746 ~ 3997416 (-)
LOC113542443 NA coding upstream 332909 4030433 ~ 4032187 (-)
sart3 sart3 coding upstream 366741 4064265 ~ 4084764 (-)
LOC117595902 LOC108255364 non-coding downstream 10172 3682580 ~ 3685306 (-)
G348909 NA non-coding downstream 78897 3615071 ~ 3616581 (-)
LOC117595903 NA non-coding downstream 88102 3561666 ~ 3607376 (-)
G348906 NA non-coding downstream 143806 3550577 ~ 3551672 (-)
G348695 NA non-coding downstream 379534 3315374 ~ 3315944 (-)
G349333 NA non-coding upstream 20715 3718239 ~ 3722019 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 766650 4464174 ~ 4512012 (-)
G349655 NA non-coding upstream 1005869 4703393 ~ 4704166 (-)
G349642 NA non-coding upstream 1079506 4777030 ~ 4786024 (-)
G349805 NA non-coding upstream 1308752 5006276 ~ 5006649 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 307748 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 529224 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 730589 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 863799 2773722 ~ 2831679 (-)
trpm6 LOC108255945,LOC108438703 other upstream 134561 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 184492 3882016 ~ 4204104 (-)
G349584 ung other upstream 841759 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1551124 5248648 ~ 5327552 (-)
G349951 NA other upstream 1623989 5321513 ~ 5364282 (-)

Expression


Co-expression Network