G349547 (tmed2,LOC105026094,LOC105904311)


Basic Information

Item Value
gene id G349547
gene name tmed2,LOC105026094,LOC105904311
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 4464174 ~ 4512012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU414221
AAAAACTTTCACTAtttttcatttgactcgACCTCATACATGTAGCCAATCAGTCGGTGAAAGTTTGACCTCGTATCGAGTCCAACATTCTCAGAAAATCTTTCAATCATTGCACCTTTAcgcaaatacaaaatatattattaaacagGACCATGAATGGAACAGTAGAGTGCGTTCACAGCCTTCACAGGTCGAGCCATTTCTAGTCATTGACTAGGACGTGGTCAtcttcccattttttttttcccaatggTTTGTCTTTATTCTCCAAACAAGTCCAAAGAACGGCGAGACACTTTGGAATACAAAAACCGCTACAAATTGTGAATTAAACGACTCGCCGCACTTCAAAAAACCTCTTCAGGTAATAAATCTGTCCCAGGGTCATGGCCACCAGCACCAGTGCCTCGAAGAACGACCAGAGCACCACGCGACTGTTCGTGTTGTCATTGACTGCAGGGACAAAAGGACAAGGTGTTAAACCTGACGTGCACGTACTTATCACTGTGTGTCTAATGAAGGATTCAAACAAACCTTAGGCTCGCAACATCAACATGCGTTCCCTTATAAAACGTATTACAATGACGAGGTATTCTGAGGATCTTACTTGCTCGGTGTATCCTCTCACGGACCTCCATGTACTCCTGCTCGTGTTTGACTGCCGTCATGGCCACAGCCAGCTCGTTAATCATCTCCTCCAGTTTGTTTTGGTGCCTCTGTCTCCATGCCGTCGCCCTTTGGCGCCTCGCCGATATCGATAGTGAACATGACGATCTTGGGGGTCATGGTGGACATCTTGTTGCTGAAGCAGAACTTGTAAGTGCCGTCCATGTGCGCAGCCACAGAGTACTTCCCGCTGGACTCTCGGTCTCCTTTATAGATCTGCTTCCCATCTGGACCTGTGATCTGTCGAACA

Function

symbol description
tmed2 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED2 (transmembrane p24 trafficking protein 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414221 True 916 lncRNA 0.46 3 4464174 4512012

Neighbor

gene id symbol gene type direction distance location
LOC113542247 lrrc43 coding downstream 34403 4402268 ~ 4429771 (-)
rsrc2 rsrc2,LOC107702941,LOC107752237,LOC107571524 coding downstream 62387 4389617 ~ 4401787 (-)
zcchc8 zcchc8 coding downstream 86845 4369672 ~ 4377329 (-)
clip1a clip1 coding downstream 103694 4329439 ~ 4360480 (-)
kntc1 kntc1,LOC108255973,LOC108261868,LOC108261321 coding downstream 137564 4287157 ~ 4326610 (-)
alkbh2 alkbh2,LOC107552593,LOC107746816 coding upstream 18109 4530121 ~ 4535479 (-)
selenom selenom,LOC103043669,LOC108438490 coding upstream 201135 4713147 ~ 4729093 (-)
c24h2orf68 c22h2orf68,cunh2orf68 coding upstream 277856 4789868 ~ 4796995 (-)
sftpbb LOC108255529 coding upstream 295438 4807450 ~ 4815249 (-)
ank1a LOC108255531,LOC108438466,LOC107722748,LOC107702961 coding upstream 313951 4825963 ~ 4930853 (-)
G349333 NA non-coding downstream 742155 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 766650 3695478 ~ 3697524 (-)
LOC117595902 LOC108255364 non-coding downstream 778868 3682580 ~ 3685306 (-)
G348909 NA non-coding downstream 847593 3615071 ~ 3616581 (-)
LOC117595903 NA non-coding downstream 856798 3561666 ~ 3607376 (-)
G349655 NA non-coding upstream 191381 4703393 ~ 4704166 (-)
G349642 NA non-coding upstream 265018 4777030 ~ 4786024 (-)
G349805 NA non-coding upstream 494264 5006276 ~ 5006649 (-)
G349812 NA non-coding upstream 506094 5018106 ~ 5018675 (-)
LOC117595908 NA non-coding upstream 543330 5055342 ~ 5060388 (-)
carnmt1 carnmt1 other downstream 260070 3882016 ~ 4204104 (-)
trpm6 LOC108255945,LOC108438703 other downstream 584226 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 1076444 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 1297920 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 1499285 2811544 ~ 2964889 (-)
G349584 ung other upstream 27271 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 736636 5248648 ~ 5327552 (-)
G349951 NA other upstream 809501 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 850270 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 1063776 5575788 ~ 5578981 (-)

Expression


Co-expression Network