G349642


Basic Information

Item Value
gene id G349642
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 4777030 ~ 4786024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU414350
CTTTTTAAGTCAGAGTGTACACGGCATGGTACTAAAAGCTAAAACATTCTCATTTTAAATCAATGTTTTTACTGTTAGTTGTATTCGTTGTACAAATGCTTTTAAGGGTGgattattaaataacatttctgaCTAAAAGTGATAACTAAATGGCAGTAATGAAGAATGGTCAAGAATCTATTTATCtaagtatttatttgtttatatgtatgtatgtacagtatgtatagtATAGATGTTTAAATTATGTtatggtgtgttgtgtttgtacACATTTGGGGCCCCACAGTGTCTATAACTGCCTCTGCCTGATCATGTACTTTTTACTGTATGACGTAAGAGATATAACCAGCTGACGGCAGAGGGGAATGCACAGGCTAATCTAGGCTGTAGTCTAAGGGCCCACAGTGATCAGGGAGCCTCTGTTCAACTGTttttacttatatatttttaaaccgTCCAAATTCCACACATGTATTCAATTGAtccataattattatttctacagtaGTAATTACTAGTGTTACTGAATGgagatttttaaataacaggCAATTGACAAGCACGCATGACGGGCTAACATCCCCATCCCTGACGTTAATTTCAGTTGTAACCTCATTAACATACAAACAACAGACACAGGGCCATAACCACCACACATTGAGGGGGACACGTCCCCTCCAATAATCAGATATGGGCAAATTGTCACCCCAATATTGATATTTTTGATGCAGCTCTGCTGCACTCCATTATACACCATTATGTATCTTGTTAGGatgacaaaaaaattttaaaaatacatttttaaggtGGTGTGTGGTCTTGAAATCCCTGAGCCTAGGTGTCTGTGTAGACCTTAATCTGCCCCTGGCTGAAGTCCATGCAGAGGGATGGGTTTCATTTCAGAGACTGGTTGCCATGACCCTATTCACAAGTTACTTGAGCTCACAGGTTATTCATAGCAACGGACTTGGACACCATCTTAATATGACTCCTTCTTATTTCATGCATGTTGGCCACCATCCGGGGTGCTCTGAATTAATCATAGCACAAGCACTCAACCTACTACACGTATGACTGATGGAAGACAGAGACTCAAAAGCACCTGGTTAAATAGGCATCaaattactaataaataattatgaacAGATTACCATTATCATGTATGAACAGATTGGTTTGAAAGGAGGTACCATACAGTGATGGATATATGTCCAAGttctcataaaaataaaaccttgttAAGAAATTTGCACTGTAAGCCTTGCAGGAAAAGTCACAGGAGAAACCAGAGATGGCTCTTGATGGCTCTTGGCAAGGTACCTACTGTAGGGACACACACACGAACCATACTCACTCGTTTAGTGTAAATGTTCATCATTAACCTTTTTATGCCCATTtgaattaatgaatgtaaatgaaactGATGGCctgtataaaattattttagatttaaccTTGCATCTCAATTCTGCTGTCTCCATATGTCAGTTActtcaattcagtttatttcTAATGTGCTTCACAAAGCGCAGGTTTTCAGAAAACATAAACTGGAACAAGTCCTCTTCTAGGCAACACCCAATATTGGGAATTGAAATCATTACAGTACACAGGTGTAGAGGAATAAACACAGACAGTACTAAGTGTGCTGAatggatgttcagtatgagcagattgtgaatacgagtcctgggatgagcaacgtctttatgattacagcagcagttcataGAAGTTACTAATCTAAAGCATACAGGTGAtcttatccactgaagcaaggtgAGATTTGGGCATAAACAGTTGCATAAAAAGTGCAAACCAGTAGGGTACTCAAATGCAATGTCACATTTTCTaaggttacttttttttttacttgcagaTAAACCAGACCAGATAAACTTACTGTTTGAGTTGAACCTGGAACCTGGTTTATCGCTACTAAACCACAGCTAAGCTAATGACAGAGTAACAACTCCATCACTCAAAAAGATGAATACACAAATTATCtggtgtttatgttttttttttttttttttaaatgtttttattaatattaacactgACAACACTTGGGAGAATGCcaaatatttattgttaaatgatataaataaatggaaGGGGTAAAATAAAGAGTATAAAGTAAAAGACCTCAGGGACAGGAGAGAGACTGCATGTAAGCAAAGCTAGGTTCTCTGTAAAACACTctgtaaaagacatttttcagtCTCAACAAGGCAAAGTAAGAAGAACGTGAACGTGATGGAGAAAATGCccattacatttaaaaaggtGGCACTACAGTTTTTCCTCGAACATCAGCACCATAGTTTTTTGTAGTACATTTTGAAACCACTGAAGACCACCAGACAAAAGTTGTAAACTAAGCTACCATATCTGCATGTAAGGTTCCACAGGTTGAGGAATAAccaaataatgcataaaatcagaaCAGAAGAATAGGAAAGGAAGCAGTTTAagtttggttttgtgtgtggtttttgtttgttttttttaataaaagctgtcAAAGCCGAGAGATATTCCAATACTCATGGGGAAATTTTGTCCccatcaagatataaaaacatgctcacacatgaacatgaaaacctttaaagttaaaaatacGCATAAATCTGTTATAATAAGGCAAAATACGTCTCATCATTTAAGCCCTTAAATGTTCACTTATACAATCAATTCTTCTATCATGCTGTacttacataaatataattatatgaaatatatgaaataagaGTCATGTGTCCTGTTAAAATGATCAAGTGCTTAGGATCTGTCCATATTCAATAACTGACCTGGTCCCCAGCACCAATGTCCTCCTCGTTACGGTCCAAGTGAACTCCCTGGGCAATGTCTGGAGACTGCTGCTCCAAAGCCACTAACACATTACAGGTCTTATAATCAAAACCTAAGAGTAAAGAAAATACAGATATTAACTGAATAGCACTACATGGCCTTgagtttattatataaaaaaaggatCGAAAACCACAGTTCAAGAAAGTTCATACtagtttattactgtgttaTAGAGGAAGGTTCATAATTTGGTAACCAATACAGTTAATCGATTAATGAACTAAAACTCAACAGCTGAtagaattttcaaaaaaattaagCAGACACCAATAGCTAATCAACTCCTATATTTATGGCTTATTATTCACCATAAAGCATATTCGATCCCGTAACTACTATGGAGTACTCAGTAACTACAGGGAAACGATTTGGAAAGGTTTTAGCTGCAGGTTTAAGGAATCTACATCTGGATGTACTGACAGCTCCTGGGCTTGAGGCGTTAAACGGCTTTAAAAACGTGATTATCAATTTCTTTACAGATTGTGGAATATAACGGCATGTTCATGATGGTAACATTATGATTAATCTCATTAACATGATATAACAATTattcatgatataaaatatggacTAATATACTGTTAATGCTACACTATAccagtattttatatatatataaaatatgcagtATTCCTCTTGACAGATGATATTAGATTTGTCActcagcataaaaaaaaaaaaaaacaacgaacTATTAGACAGTGATCATCGTAACAATAAATAttcatgttaataaatatttccGCAGATTCTGTACTACAGTGTTATAAGACACAAACATCATAATGCAATACCTGCATTGCTACTACAGTGTTATAAGGCATATAACAGTTCTGATCATGAATATCTGCGTGaataagtgtatgaatgtgtttgtgcatggttCAGTGCGATGGAAAAGCATTCCATTCAGGAtgcattcctgcctcacgcccagtgttcctgggataggctccggattcacTGCGATACTGACCAGCCATAAAGTAAtcacagaagatgaatgaatgatagcAGGTTGTGTGGCTGTGTGCTGAATTTGTTCTACGCCCATCCAATCCTAGCGCTGATACACAAACCTTTTGAGGAGTCGTCATAACCGATGTGTCTGACAGTGTCCCGGACAATCTTCTGGTAGTCCACGGTGGCATGAGAGGTCACTTCTCCTGCCAGCAGGATCATCCCAGTCTTAGCTACCGTttctgaaagaggaaaaatatatatttaaaaggtACAAGTAGATGTTTAGGAGACGCAGTCGGAGACACGTCAAGGGCGTCTGtgtaaaatcatttatttaccaCAAGCCACTTTGGCATCTGGGTCTTGTTTAAGATGGGCATCAAGAACAGCATCACTAATCTGGTCACAAATCTTATCTGTTAAAtagaaaacagaacaaaacaacaataatgtAACAGCGAACAAGTGGAAGGATCAATGTTTCTTAAGACTTATTCAGAGGACATCAATCTGGACATCAACTAGTTGGAGATGTTTTCAGACCTCGTGCTCATTACTAaccatatataaataaacatgattatttttatattagtcCTAACACTGACACTTTTCTGTGACTGTTTCCAGTAAATGTTAGGAGTAATGAGTGTTTAGAGCATTTAAAGTGTCCACACAGCTGTTAaagatatatatagagagagcaAATCTAACTTgatagtgatttttttctgtctacaATTCCCTGGAACACAGAAACATCCTGTTACAGTAAGAGCACATGGAAAAGGTTTGAAACGCCGCACAACGCCTCTGAGATGATGAAATGTACGCTAACATGCTAGCTTTCTTTCACAACGTGTTTCAGCTCTACAGGAATGATGAGATGAGGAGATTACCCGGATGTCCCTCTCCCACAGACTCGGAGGTGAATAAAAAGCAGTCTTCATCTATGAAGCCGTTGTGAAAACCGTTCATTTCTCCGTTCATGTTTATCCTCCCGGTTGCCTCGTGCTTCCGATGATCACCGCGATGCCCCTGGTCTCGTGCAGCAGCCCCGCGTGCTCCTACCGCGAGCTTTTAGCCCCGC

Function

NR:

description
ceramide synthase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414350 True 4936 lncRNA 0.37 2 4777030 4786024

Neighbor

gene id symbol gene type direction distance location
selenom selenom,LOC103043669,LOC108438490 coding downstream 47937 4713147 ~ 4729093 (-)
alkbh2 alkbh2,LOC107552593,LOC107746816 coding downstream 241551 4530121 ~ 4535479 (-)
eif2b1 eif2b1,LOC107728130 coding downstream 302148 4467458 ~ 4474882 (-)
LOC113542247 lrrc43 coding downstream 347259 4402268 ~ 4429771 (-)
rsrc2 rsrc2,LOC107702941,LOC107752237,LOC107571524 coding downstream 375243 4389617 ~ 4401787 (-)
c24h2orf68 c22h2orf68,cunh2orf68 coding upstream 3844 4789868 ~ 4796995 (-)
sftpbb LOC108255529 coding upstream 21426 4807450 ~ 4815249 (-)
ank1a LOC108255531,LOC108438466,LOC107722748,LOC107702961 coding upstream 39939 4825963 ~ 4930853 (-)
ebf2 LOC108255422,LOC108438472,LOC105027009,LOC100704273,LOC102791852 coding upstream 161928 4947952 ~ 4974098 (-)
dguok LOC108256054,LOC108438482 coding upstream 213999 5000023 ~ 5004375 (-)
G349655 NA non-coding downstream 72864 4703393 ~ 4704166 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding downstream 265018 4464174 ~ 4512012 (-)
G349333 NA non-coding downstream 1055011 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 1079506 3695478 ~ 3697524 (-)
LOC117595902 LOC108255364 non-coding downstream 1091724 3682580 ~ 3685306 (-)
G349805 NA non-coding upstream 220252 5006276 ~ 5006649 (-)
G349812 NA non-coding upstream 232082 5018106 ~ 5018675 (-)
LOC117595908 NA non-coding upstream 269318 5055342 ~ 5060388 (-)
G349823 NA non-coding upstream 279753 5065777 ~ 5066161 (-)
G349830 NA non-coding upstream 316704 5102728 ~ 5102953 (-)
G349584 ung other downstream 237199 4539283 ~ 4539831 (-)
carnmt1 carnmt1 other downstream 572926 3882016 ~ 4204104 (-)
trpm6 LOC108255945,LOC108438703 other downstream 897082 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 1389300 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 1610776 3156042 ~ 3166254 (-)
hip1rb hip1r,LOC108255864 other upstream 462624 5248648 ~ 5327552 (-)
G349951 NA other upstream 535489 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 576258 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 789764 5575788 ~ 5578981 (-)
pappab LOC108255326,LOC108423596 other upstream 1270957 6056981 ~ 6120959 (-)

Expression


Co-expression Network