G349805


Basic Information

Item Value
gene id G349805
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5006276 ~ 5006649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU414540
AAAGATATTGTATGCTATATCTTGAACATTTTCTCCAACAACTGTTTATTTAATGATACtttataataaatactaaataatactATTGATAATAGGATGAACAGAGTGCCtaagtaaaagaaaatacacagcagtattttcacttgctaaggtATCATTTATGTAGAGCTGTAGAGCATGTCAGAACTACAACTCTTGGCGTTTCTTACCCTCCCTGATAGGCCATGAAACTCCGGCAATTAACTTTAGTctcctggatttttttttaaaaaaagggctTTTTTTTGTCAGCTTAAATTGGAATTAGTAAACAAATTCAAAGTCCGAGCATGCGAGTTTATTTGAGATGCATGAGACATGACTTCCAAAATAGT

Function

GO:

id name namespace
GO:0048583 regulation of response to stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414540 True 374 lncRNA 0.32 1 5006276 5006649

Neighbor

gene id symbol gene type direction distance location
dguok LOC108256054,LOC108438482 coding downstream 1901 5000023 ~ 5004375 (-)
ebf2 LOC108255422,LOC108438472,LOC105027009,LOC100704273,LOC102791852 coding downstream 32178 4947952 ~ 4974098 (-)
ank1a LOC108255531,LOC108438466,LOC107722748,LOC107702961 coding downstream 75423 4825963 ~ 4930853 (-)
sftpbb LOC108255529 coding downstream 191027 4807450 ~ 4815249 (-)
c24h2orf68 c22h2orf68,cunh2orf68 coding downstream 209281 4789868 ~ 4796995 (-)
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding upstream 553 5007202 ~ 5016415 (-)
kmt5ab LOC108256031 coding upstream 77408 5084057 ~ 5101494 (-)
LOC117595987 NA coding upstream 225434 5232083 ~ 5233817 (-)
LOC113542489 LOC108255707 coding upstream 517497 5524146 ~ 5532315 (-)
cntrl cntrl coding upstream 784761 5791410 ~ 5838534 (-)
G349642 NA non-coding downstream 220252 4777030 ~ 4786024 (-)
G349655 NA non-coding downstream 302110 4703393 ~ 4704166 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding downstream 494264 4464174 ~ 4512012 (-)
G349333 NA non-coding downstream 1284257 3718239 ~ 3722019 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding downstream 1308752 3695478 ~ 3697524 (-)
G349812 NA non-coding upstream 11457 5018106 ~ 5018675 (-)
LOC117595908 NA non-coding upstream 48693 5055342 ~ 5060388 (-)
G349823 NA non-coding upstream 59128 5065777 ~ 5066161 (-)
G349830 NA non-coding upstream 96079 5102728 ~ 5102953 (-)
G349832 NA non-coding upstream 97381 5104030 ~ 5104290 (-)
G349584 ung other downstream 466445 4539283 ~ 4539831 (-)
carnmt1 carnmt1 other downstream 802172 3882016 ~ 4204104 (-)
trpm6 LOC108255945,LOC108438703 other downstream 1126328 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 1618546 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 1840022 3156042 ~ 3166254 (-)
hip1rb hip1r,LOC108255864 other upstream 241999 5248648 ~ 5327552 (-)
G349951 NA other upstream 314864 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 355633 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 569139 5575788 ~ 5578981 (-)
pappab LOC108255326,LOC108423596 other upstream 1050332 6056981 ~ 6120959 (-)

Expression


Co-expression Network