G349843


Basic Information

Item Value
gene id G349843
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5138944 ~ 5139217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU414579
CCTGCCCAACCTTCAGGACTTGTAcaactccagagtgaagaagcgggcagctaacatcatcacagacccctctcaccccggccacaacctgtttgcactcctcccttcaggcagacgttacagatctctgtgcactagaacatctaggcataaaaacagttttttcccccatgccatctccagcttaaacagctaacacaggaatcattacctgtgtttttttattctataattcatttctgtaattcatcctccatctctaattactACCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414579 True 274 lncRNA 0.45 1 5138944 5139217

Neighbor

gene id symbol gene type direction distance location
kmt5ab LOC108256031 coding downstream 37450 5084057 ~ 5101494 (-)
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding downstream 122529 5007202 ~ 5016415 (-)
dguok LOC108256054,LOC108438482 coding downstream 134569 5000023 ~ 5004375 (-)
ebf2 LOC108255422,LOC108438472,LOC105027009,LOC100704273,LOC102791852 coding downstream 164846 4947952 ~ 4974098 (-)
ank1a LOC108255531,LOC108438466,LOC107722748,LOC107702961 coding downstream 208091 4825963 ~ 4930853 (-)
LOC117595987 NA coding upstream 92866 5232083 ~ 5233817 (-)
LOC113542489 LOC108255707 coding upstream 384929 5524146 ~ 5532315 (-)
cntrl cntrl coding upstream 652193 5791410 ~ 5838534 (-)
c5 c5 coding upstream 701284 5840501 ~ 5865005 (-)
prdm12b prdm12b,prdm12,LOC108255448,LOC108423597,LOC103042983,LOC107688643,LOC107731029,LOC107665021 coding upstream 726621 5865838 ~ 5870388 (-)
G349811 NA non-coding downstream 12127 5115816 ~ 5126817 (-)
G349833 NA non-coding downstream 28641 5109055 ~ 5110303 (-)
G349832 NA non-coding downstream 34654 5104030 ~ 5104290 (-)
G349830 NA non-coding downstream 35991 5102728 ~ 5102953 (-)
G349823 NA non-coding downstream 72783 5065777 ~ 5066161 (-)
G349844 NA non-coding upstream 377 5139594 ~ 5139826 (-)
G349949 NA non-coding upstream 125635 5264852 ~ 5275075 (-)
G349959 NA non-coding upstream 372463 5511680 ~ 5514809 (-)
G349960 NA non-coding upstream 378655 5517872 ~ 5518291 (-)
G350057 NA non-coding upstream 502668 5641885 ~ 5642417 (-)
G349584 ung other downstream 599113 4539283 ~ 4539831 (-)
carnmt1 carnmt1 other downstream 934840 3882016 ~ 4204104 (-)
trpm6 LOC108255945,LOC108438703 other downstream 1258996 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 1751214 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 1972690 3156042 ~ 3166254 (-)
hip1rb hip1r,LOC108255864 other upstream 109431 5248648 ~ 5327552 (-)
G349951 NA other upstream 182296 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 223065 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 436571 5575788 ~ 5578981 (-)
pappab LOC108255326,LOC108423596 other upstream 917764 6056981 ~ 6120959 (-)

Expression


Co-expression Network