LOC113542569


Basic Information

Item Value
gene id LOC113542569
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6346663 ~ 6352372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU415368
ctgtgttttcccccTGTGTTTGTGGGAGTGTTAAGTTTATGTTCATccctgtgcttgtgtgtatggtTAGATTAGTTACCGTATGCACTGTGTATAGTTTTGTTTTCTAGTTTAAGTTTACGAGTCGTGTCTAGCTGTAGCCTAGccttcatgtcttttttttctgtctgcttCCCAATGTTTTTCTTCCCAATGTTTTGCTTCCTTTAAAGAAGTTCTGCATTTTGCATCCGTCTACCTGGATTCTCCGTTATGACATAATTGGACATTATGGAAACATTTGGTGTTAACATTCTACAAACATTGCAtgtgggaCTGAGTGTGCCAAACTTGTTGCCTTCCAAATGAgagagaaactgtgtgtgtgttagtccatAAAACAGGATTTGCTCCTTTAGTCTGGATTAGCTTGAAAAGCACTCACTCCCCACTAAAAGCACTACATATGGCCAAACTACTGTCAGGTTTCTCTGGCTTTGGAGAAGATTATCACTTGCGTAAGTGTTTGAGCACTCAGTGCTGTGTGAAGAACTCCAGCTGCAAACATGCCTCCCTGTTCACCACTGCTGCATGGACTCACACTGTTCTGCTGCTGGGCGCTGCTTTCAATTTTTATAACACAAGctGATGCACTGCAGTGTTATGCCTGTAACATCCAGGGCCAAAGATATGTGGATGTAGGATGTTCCAGTCCTGAGGTCATCACCTGCTCCCATTTCCACAAAGGCTTTAAGCAGCGTTTCTGCATTAGAACAGAAAGCATTGCTTTAGGGATGGTGCTCACCAGTGGATGTGCTACATCCCGTCACTGCCACACAGAGGAACTTCCGGGAGTGAAAATACACTGCTGCGACTCAGATCTGTGTAACTGTGCTTCCTGGCATCACAAGTCGTCATTATCATCACAAATACTTTACTTAATGATGGCTTCCTTTACCACACTGTGGCTACAGCTCTGAAAAGCAAAAATGCCTAAAAAAGAAATGCAGGGACAGAGGGCATAAGTGTCAGAGAATGAAAGCTTGTGCTAAGATTTGAGATGCATTTTAACCTGGTATGGGCCCAAAAACTACTACTGTTGCCCCTGGTAGACAGAACAATCTACCCAAATACAGGTGCTGTGGAAGGCCTGCAAAATATCTTTAGGTCTTTCTGTCCTTTCATCTGTTGTCTTTACTTTGCACTTGTAATCTTGTCTTTACTTTGCATCTTGTTTCTTTTGAGTGTATCttttaatgcaatttaattTTGATAGATATAGTTATGCTCTCATTTTCccatttatgcattttttaatgtttattttagtaAAGTGTTTTAAAACTGGATGGACACAGTTACATGTGGGCTTATCCTTACATgcacactgtccaatcacaatCAGATTACAGTGTCTTAGAGGTGTACAACACAATGTCATCTTGAACCAAACAGAACCTGACAACATAACAGCATTAGCCCAAAGAAATCACAGCTTTTTGCAACACTTCATAAGCAGTGCTTGTGTATCCAGTTATGTGGGCCTTATTTACAGCAGAGTAAATTCTCATCCATCATCATTTCAAATATCACCTTCCCA
>XR_003404315.2
GTTAAGTTTATGTTCATccctgtgcttgtgtgtatggtTAGATTAGTTACCGTATGCACTGTGTATAGTTTTGTTTTCTAGTTTAAGTTTACGAGTCGTGTCTAGCTGTAGCCTAGccttcatgtcttttttttctgtctgcttCCCAATGTTTTTCTTCCCAATGTTTTGCTTCCTTTAAAGAAGTTCTGCATTTTGCATCCGTCTACCTGGATTCTCCGTTATGACATAATTGGACATTATGGAAACATTTGGTGTTAACATTCTACAAACATTGCAtgtgggaCTGAGTGTGCCAAACTTGTTGCCTTCCAAATGAgagagaaactgtgtgtgtgttagtccatAAAACAGGATTTGCTCCTTTAGTCTGGATTAGCTTGAAAAGCACTCACTCCCCACTAAAAGCACTACATATGGCCAAACTACTGTCAGGTTTCTCTGGCTTTGGAGAAGATTATCACTTGCGTAAGTGTTTGAGCACTCAGTGCTGTGTGAAGAACTCCAGCTGCAAACATGCCTCCCTGTTCACCACTGCTGCATGGACTCACACTGTTCTGCTGCTGGGCGCTGCTTTCAATTTTTATAACACAAGctGATGCACTGCAGTGTTATGCCTGTAACATCCAGGGCCAAAGATATGTGGATGTAGGATGTTCCAGTCCTGAGGTCATCACCTGCTCCCATTTCCACAAAGGCTTTAAGCAGCGTTTCTGCATTAGAACAGAAAGCATTGCTTTAGGGATGGTGCTCACCAGTGGATGTGCTACATCCCGTCACTGCCACACAGAGGAACTTCCGGGAGTGAAAATACACTGCTGCGACTCAGATCTGTGTAACTGTGCTTCCTGGCATCACAAGTCGTCATTATCATCACAAATACTTTACTTAATGATGGCTTCCTTTACCACACTGTGGCTACAGCTCTGAAAAGCAAAAATGCCTAAAAAAGAAATGCAGGGACAGAGGGCATAAGTGTCAGAGAATGAAAGCTTGTGCTAAGATTTGAGATGCATTTTAACCTGGTATGGGCCCAAAAACTACTACTGTTGCCCCTGGTAGACAGAACAATCTACCCAAATACAGGTGCTGTGGAAGGCCTGCAAAATATCTTTAGGTCTTTCTGTCCTTTCATCTGTTGTCTTTACTTTGCACTTGTAATCTTGTCTTTACTTTGCATCTTGTTTCTTTTGAGTGTATCttttaatgcaatttaattTTGATAGATATAGTTATGCTCTCATTTTCccatttatgcattttttaatgtttattttagtaAAGTGTTTTAAAACTGGATGGACACAGTTACATGTGGGCTTATCCTTACATgcacactgtccaatcacaatCAGATTACAGTGTCTTAGAGGTGTACAACACAATGTCATCTTGAACCAAACAGAACCTGACAACATAACAGCATTAGCCCAAAGAAATCACAGCTTTTTGCAACACTTCATAAGCAGTGCTTGTGTATCCAGTTATGTGGGCCTTATTTACAGCAGAGTAAATTCTCATCCATCATCATTTCAAATATCACCTTCCCATAGTTGGTCCTGTTATTCCATATCAGTCTTGAAGATTATAACATTTAGTTTGTTGTCATTCTGCAAATCACTGACACTCTTAGAAGTAAACAAAAAGTTGAAAAATCTGAGAAACTGCATTTATTTCATggttataataaaatgtgttagaTTGTTTTGCTAAAGTACTAAATGCTAAGAGAGATTTTTTAACAAGTAGCTTTACTAATAActactgttactattactatta

Function

GO: NA

KEGG:

id description
ko03430 Mismatch repair
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU415368 False 1579 TUCP 0.41 5 6346895 6352372
XR_003404315.2 True 1782 lncRNA 0.39 5 6346663 6352343

Neighbor

gene id symbol gene type direction distance location
rxrab LOC108255946,LOC108423686,LOC103046247,LOC107660328,LOC107672569,LOC107552637,LOC107740802,LOC107731035 coding downstream 18835 6281694 ~ 6327828 (-)
brd3b LOC108255802,LOC107665032,LOC107740804 coding downstream 79076 6250931 ~ 6267587 (-)
fam78aa fam78aa,LOC108255801,LOC108423592,LOC107740833,LOC107731022,LOC107552624 coding downstream 106851 6236120 ~ 6239812 (-)
LOC113542600 LOC108255798 coding downstream 116380 6218805 ~ 6230283 (-)
gpsm1a LOC108255912,LOC108423595,LOC107595532,LOC107665019 coding downstream 171028 6172304 ~ 6175635 (-)
lix1 lix1 coding upstream 91332 6443704 ~ 6452129 (-)
zbtb26 zbtb26,LOC103133383,LOC106934410,LOC106934416,LOC106930504,LOC103152387 coding upstream 123997 6476369 ~ 6479116 (-)
krt1-c5 LOC108255341,LOC108423676,LOC107740828,LOC106585415,LOC105014123 coding upstream 136115 6488487 ~ 6492858 (-)
LOC113542264 LOC107549184 coding upstream 156058 6508430 ~ 6515609 (-)
LOC117595918 NA coding upstream 160062 6512434 ~ 6514926 (-)
G350513 NA non-coding downstream 36213 6309132 ~ 6310450 (-)
LOC117595975 NA non-coding downstream 404831 5938466 ~ 5941832 (-)
G350114 NA non-coding downstream 615943 5730462 ~ 5730720 (-)
LOC117595899 NA non-coding downstream 636189 5707923 ~ 5710474 (-)
G350090 NA non-coding downstream 655894 5690361 ~ 5690769 (-)
LOC117595904 NA non-coding upstream 30732 6383104 ~ 6388571 (-)
G350664 NA non-coding upstream 342483 6694855 ~ 6695063 (-)
G350714 NA non-coding upstream 390021 6742393 ~ 6742602 (-)
LOC113537000 NA non-coding upstream 549921 6902293 ~ 6914343 (-)
G350906 NA non-coding upstream 735342 7087714 ~ 7088036 (-)
pappab LOC108255326,LOC108423596 other downstream 225704 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 767682 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 823382 5362282 ~ 5523281 (-)
G349951 NA other downstream 982381 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 1019111 5248648 ~ 5327552 (-)
G350867 NA other upstream 412542 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1233100 7585472 ~ 7597962 (-)
card9 card9 other upstream 1250535 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 2201275 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 2218145 8570517 ~ 8586011 (-)

Expression


Co-expression Network