Gene
RNA
| Item | Value |
|---|---|
| gene id | G351033 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 7200746 ~ 7201552 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU415951 | True | 240 | lncRNA | 0.34 | 2 | 7200746 | 7201552 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fam172a | fam172a,LOC107756291 | coding | downstream | 95887 | 6937285 ~ 7104859 (-) |
| LOC113537041 | LOC108255977 | coding | downstream | 646862 | 6537239 ~ 6553884 (-) |
| LOC113537042 | LOC108255977 | coding | downstream | 663461 | 6534776 ~ 6537285 (-) |
| LOC113542264 | LOC107549184 | coding | downstream | 685137 | 6508430 ~ 6515609 (-) |
| LOC117595918 | NA | coding | downstream | 685820 | 6512434 ~ 6514926 (-) |
| mctp1a | mctp1,LOC107756292,LOC107703246,LOC107720291 | coding | upstream | 66614 | 7268166 ~ 7374405 (-) |
| zgc:194908 | mctp1 | coding | upstream | 209355 | 7410907 ~ 7412377 (-) |
| ttc37 | ttc37,LOC107735852 | coding | upstream | 227765 | 7429317 ~ 7454498 (-) |
| hmgcra | hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 | coding | upstream | 308365 | 7509917 ~ 7518413 (-) |
| snapc4 | NA | coding | upstream | 406232 | 7607784 ~ 7620562 (-) |
| G350906 | NA | non-coding | downstream | 112710 | 7087714 ~ 7088036 (-) |
| LOC113537000 | NA | non-coding | downstream | 286403 | 6902293 ~ 6914343 (-) |
| G350714 | NA | non-coding | downstream | 458144 | 6742393 ~ 6742602 (-) |
| G350664 | NA | non-coding | downstream | 505683 | 6694855 ~ 6695063 (-) |
| LOC117595904 | NA | non-coding | downstream | 812175 | 6383104 ~ 6388571 (-) |
| G351266 | NA | non-coding | upstream | 265044 | 7466596 ~ 7466953 (-) |
| G351308 | NA | non-coding | upstream | 336486 | 7538038 ~ 7538341 (-) |
| G351362 | NA | non-coding | upstream | 347034 | 7548586 ~ 7642268 (-) |
| G351384 | NA | non-coding | upstream | 433550 | 7635102 ~ 7636193 (-) |
| G351517 | NA | non-coding | upstream | 579228 | 7780780 ~ 7781553 (-) |
| G350867 | NA | other | downstream | 425597 | 6764914 ~ 6775149 (-) |
| LOC113542569 | NA | other | downstream | 848374 | 6346663 ~ 6352372 (-) |
| pappab | LOC108255326,LOC108423596 | other | downstream | 1079787 | 6056981 ~ 6120959 (-) |
| LOC117595919 | NA | other | downstream | 1621765 | 5575788 ~ 5578981 (-) |
| LOC113542328 | hectd4 | other | downstream | 1677465 | 5362282 ~ 5523281 (-) |
| ccdc180 | ccdc180 | other | upstream | 383920 | 7585472 ~ 7597962 (-) |
| card9 | card9 | other | upstream | 401355 | 7602907 ~ 7607466 (-) |
| hint2 | hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 | other | upstream | 1352095 | 8553647 ~ 8556676 (-) |
| malt1 | malt1 | other | upstream | 1368965 | 8570517 ~ 8586011 (-) |
| sh2d3cb | sh2d3c | other | upstream | 1439390 | 8640942 ~ 8654612 (-) |
