G351266


Basic Information

Item Value
gene id G351266
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7466596 ~ 7466953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU416207
GTTCAGATAAACGCACATGAGCCTCTGCTGTGTAGTAACAGTTTGAGTTTGTGTAccttgctgaaaaaaacaaacaaacaatcaaacaaaccaTAGAAtccctcatagaatttgtaatggttttaatggttataactGGAATTTTACTGGTTTTAAATGAAACTCtgatggtccctgtgggtctctactggtaatttgttgccttctgttgCTGCattgttatgtctagtggataccattaaggaccggtgatggtaatggttttaatggttggctgatggtttgtaattgtatttgtagtggaaaccattagaatttctgtaatggtttttattttcctcagcAGGGTATGTGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU416207 True 358 lncRNA 0.37 1 7466596 7466953

Neighbor

gene id symbol gene type direction distance location
ttc37 ttc37,LOC107735852 coding downstream 12098 7429317 ~ 7454498 (-)
zgc:194908 mctp1 coding downstream 54219 7410907 ~ 7412377 (-)
mctp1a mctp1,LOC107756292,LOC107703246,LOC107720291 coding downstream 92191 7268166 ~ 7374405 (-)
kiaa0825 kiaa0825 coding downstream 239912 7106152 ~ 7226684 (-)
fam172a fam172a,LOC107756291 coding downstream 361737 6937285 ~ 7104859 (-)
hmgcra hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 coding upstream 42964 7509917 ~ 7518413 (-)
snapc4 NA coding upstream 140831 7607784 ~ 7620562 (-)
entr1 sdccag3 coding upstream 154396 7621349 ~ 7627854 (-)
otpb otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478 coding upstream 332256 7799209 ~ 7802780 (-)
lhfpl2b lhfpl2,LOC108423653 coding upstream 385008 7851961 ~ 7863470 (-)
G351033 NA non-coding downstream 265044 7200746 ~ 7201552 (-)
G350906 NA non-coding downstream 378560 7087714 ~ 7088036 (-)
LOC113537000 NA non-coding downstream 552253 6902293 ~ 6914343 (-)
G350714 NA non-coding downstream 723994 6742393 ~ 6742602 (-)
G350664 NA non-coding downstream 771533 6694855 ~ 6695063 (-)
G351308 NA non-coding upstream 71085 7538038 ~ 7538341 (-)
G351362 NA non-coding upstream 81633 7548586 ~ 7642268 (-)
G351384 NA non-coding upstream 168149 7635102 ~ 7636193 (-)
G351517 NA non-coding upstream 313827 7780780 ~ 7781553 (-)
G351529 ckmt2,ckmt2b,LOC107602239,LOC107665780 non-coding upstream 322121 7789074 ~ 7848880 (-)
G350867 NA other downstream 691447 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1114224 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1345637 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 1887615 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 1943315 5362282 ~ 5523281 (-)
ccdc180 ccdc180 other upstream 118519 7585472 ~ 7597962 (-)
card9 card9 other upstream 135954 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 1086694 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 1103564 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 1173989 8640942 ~ 8654612 (-)

Expression


Co-expression Network