G351308


Basic Information

Item Value
gene id G351308
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7538038 ~ 7538341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU416253
CTGGGAGTGTCTTTCGTGACtgtttttgtgtctttgtgAATGTTTCCTTTAGATTCAAGCATTTCTCAGTTGCAACACTGTTTAGAGTGTCTATGTTGCAGCATTACTGTGAAAGTTGGGCAAAGATGTTTGATTTTGTTGGCTTTCTTCACAACAAAGCTGGCCTGTGACTGTCTTCATTGATGATGGTTCCACTTCTTCAGGGGTTACCCTCATGGCTCTGGACTGACCATACCCATGCTAGAAATGATTCAAAGTGATTCATGACTCAGTCATTATAAGCATTAGCATTACTGTAGCTGTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU416253 True 304 lncRNA 0.41 1 7538038 7538341

Neighbor

gene id symbol gene type direction distance location
hmgcra hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 coding downstream 19625 7509917 ~ 7518413 (-)
ttc37 ttc37,LOC107735852 coding downstream 83540 7429317 ~ 7454498 (-)
zgc:194908 mctp1 coding downstream 125661 7410907 ~ 7412377 (-)
mctp1a mctp1,LOC107756292,LOC107703246,LOC107720291 coding downstream 163633 7268166 ~ 7374405 (-)
kiaa0825 kiaa0825 coding downstream 311354 7106152 ~ 7226684 (-)
snapc4 NA coding upstream 69443 7607784 ~ 7620562 (-)
entr1 sdccag3 coding upstream 83008 7621349 ~ 7627854 (-)
otpb otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478 coding upstream 260868 7799209 ~ 7802780 (-)
lhfpl2b lhfpl2,LOC108423653 coding upstream 313620 7851961 ~ 7863470 (-)
homer1b homer1b,LOC108255354,LOC108423652,LOC107720277,LOC107703256,LOC107555494,LOC107699726 coding upstream 333851 7872192 ~ 7896685 (-)
G351266 NA non-coding downstream 71085 7466596 ~ 7466953 (-)
G351033 NA non-coding downstream 336486 7200746 ~ 7201552 (-)
G350906 NA non-coding downstream 450002 7087714 ~ 7088036 (-)
LOC113537000 NA non-coding downstream 623695 6902293 ~ 6914343 (-)
G350714 NA non-coding downstream 795436 6742393 ~ 6742602 (-)
G351362 NA non-coding upstream 10245 7548586 ~ 7642268 (-)
G351384 NA non-coding upstream 96761 7635102 ~ 7636193 (-)
G351517 NA non-coding upstream 242439 7780780 ~ 7781553 (-)
G351529 ckmt2,ckmt2b,LOC107602239,LOC107665780 non-coding upstream 250733 7789074 ~ 7848880 (-)
G351625 NA non-coding upstream 410859 7949200 ~ 7950503 (-)
G350867 NA other downstream 762889 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1185666 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1417079 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 1959057 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 2014757 5362282 ~ 5523281 (-)
ccdc180 ccdc180 other upstream 47131 7585472 ~ 7597962 (-)
card9 card9 other upstream 64566 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 1015306 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 1032176 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 1102601 8640942 ~ 8654612 (-)

Expression


Co-expression Network