G351362


Basic Information

Item Value
gene id G351362
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7548586 ~ 7642268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU416324
GGCTTTCAACTTCTGTGTAGATATGTGTAGAGTGAACAcatgaatgtgaaaaaaaaaaaacctcatttttttcacattgctTGAGTTTATAGAACGGAGATTCTTCATGTATAGGAAGCTGTAATTCATTGCTGTATCTGTGACACGATCATTAAATATGAGCAACACACAATCAAGCATTTTAGCTCAGTGTTTCTAACATGATAATAATCCCAAGCTTAAAGAGATACTGCTGTAgccaacctcttttttttttttttttttaaacaaaacagaataaacCTTTAAGCAAGAGGCAGCGCTAAGGTTTTACAGAGATTTCACATTACGTTATCAGACACAGTGGGATTGTAAACACAcagtaataagaaatatataCTATTGTGATGACAGTAATGGAAACCATACTGAATGGAGAGTGAATGAGTATTGCATATTGCTCAGAACCTTGACTGGTGTAGAGAACGATTTCAAACACTGACGATTGTTCGTTAAAAACCTTCTCTGAAGTAAGACTGAGGCCACAATTCTACTGAGTAAGGAGGAAAATACATGATCCGACAAATGAAAAGTGGTTATGCTGCATTACTAAGACATTAAGCCTTACGGGAGTCTTTCTTAAAAATCAGTTGATGAACTATACAGATGTATTCagacacaacacaaaacacgtCGTAAGAATAAATAGGACACACGGGTACTTAAGTgtttaaataaatccaaatattACACTAAATTATTGTTATCTTGCTAAATGTTCAGTTCCACCACTTTTCActcattaaatatatttcagacTATTGCAACAGTAGATCTTCTCCCTGCTGTATATCTCTAAACCCCCTGAGCAAACACAGCAAAAACCATTTTAAATACTGAATGAGTCtggcaaaagaaaaacaacaaaggaGGAGAAAACGAAGTGACATTCAGAGCACACGTTCACGTCACAACCAAAACGAGAGAAGAAATCATGAGTACTTTGGTATCCAAGTGTTCTGATAAAGGGTAACTAAGCCATCACAAGTACAACcattttcatcttcaCGGATAATAATGGCTGTTAG
>TU416325
GGCTTTCAACTTCTGTGTAGATATGTGTAGAGTGAACAcatgaatgtgaaaaaaaaaaaacctcatttttttcacattgctTGAGTTTATAGAACGGAGATTCTTCATGTATAGGAAGCTGTAATTCATTGCTGTATCTGTGACACGATCATTAAATATGAGCAACACACAATCAAGCATTTTAGCTCAGTGTTTCTAACATGATAATAATCCCAAGCTTAAAGAGATACTGCTGTAgccaacctcttttttttttttttttttaaacaaaacagaataaacCTTTAAGCAAGAGGCAGCGCTAAGGTTTTACAGAGATTTCACATTACGTTATCAGACACAGTGGGATTGTAAACACAcagtaataagaaatatataCTATTGTGATGACAGTAATGGAAACCATACTGAATGGAGAGTGAATGAGTATTGCATATTGCTCAGAACCTTGACTGGTGTAGAGAACGATTTCAAACACTGACGATTGTTCGTTAAAAACCTTCTCTGAAGTAAGACTGAGGCCACAATTCTACTGAGTAAGGAGGAAAATACATGATCCGACAAATGAAAAGTGGTTATGCTGCATTACTAAGACATTAAGCCTTACGGGAGTCTTTCTTAAAAATCAGTTGATGAACTATACAGATGTATTCagacacaacacaaaacacgtCGTAAGAATAAATAGGACACACGGGTACTTAAGTgtttaaataaatccaaatattACACTAAATTATTGTTATCTTGCTAAATGTTCAGTTCCACCACTTTTCActcattaaatatatttcagacTATTGCAACAGTAGATCTTCTCCCTGCTGTATATCTCTAAACCCCCTGAGCAAACACAGCAAAAACCATTTTAAATACTGAATGAGTCtggcaaaagaaaaacaacaaaggaGGAGAAAACGAAGTGACATTCAGAGCACACGTTCACGTCACAACCAAAACGAGAGAAGAAATCATGAGTACTTTGGTATCCAAGTGTTCTGATAAAGGGTAACTAAGCCATCACAAGTACAACcattttcatcttcagtgtCATGTACACACGACTAATAGGTTGGTGCTTTGGATTTCCGAAAGAAATGTGGGCTTGAGATATCTTTCCTATATGTTTCAGATACTTCCGTTAAAATTCTGACAAAagtaaaatcaacaaaaaatatCTATTTTATGAAGTGCCAGCTAATACTGACCACACCGAATTTTCTATTTTAGAATTGTACTACAATTGTGATATGAACTTGTCCGTGCAAATGCCTACAAACTGTAATGTCGGGTAAACATGCCACAAATAAAAGCTAAATGAGACATGTGACCTGACATACAGAGCACAAATCATTTCTCATCGTCATTCATAACAGATCTTTCTAACCTGGACCATGCGGCAGGAAACAAATGGAGCGGATCCAATTTACAGGAGCCAGGTGTTTCAATAAACACGAgtgtaaatgaaatattcagCCTCACACCTAGACCTGAACATTTCAGATTCAGACTAAATAGGATGGGATGAAAAACCAAATATGTACTCTTTTACAAACCAGGAGCTTTGTGTTTTAGTCAGAGGCAACATCCATACATCCCATACTGTAGCCgccttttcatttcttttatgtGCGGCTCTGAAATAATAGAAGAAACTCAATCTCTTATGAGGAGGAATCTGGGATAGAAAGGGTAGCTTATATTTCCAGGTAATTGCATCATCTGGGGAAATTAGTGCCTCTGCAAAGTTATCTCCTAACAAGGATGCAAAAAGTCAGCAACTTTTCTGTAGAGACATTAGTGAGATTTGCTGCTTTCTTCCTTTGCATATTAGATTTTCTCTTCTTGAGTGAAACTGATGCAGATGCATTGCGGAACTCACAATAGTTGAAGTGAAGGAGAAAACATCCTTAAAGAGCACCAGAATTGTCACAAGCTATAGGCTACGTGGCAACGTCACAAAtgcatacactctcagaaaaaaattcacCCTCGAGGGTATACCTTTAATGTGCACCTTTCAAAACACAGatatacctttaaaaatgatttaagataCACAAAACGTCTTTAGGTTCATGTTTGAAAGgtccacattattattatttttttctgacagtgtaCTACTTACACAAACCTGAAATTAGATGTTGCATTATTTCTGATGGCACAACACCAAGCACATTGGGATTGTACAGTGTTTCTGAAGCTGTCAGATAACGGAGATCATATGGACTTCAGATGACATATGATGCATTTTGTTCTCGCTCGTGTTACAGAAGAAAACAGTACCAGTAACTTTAGTTCCACATCCTGTACTCTAAGTCAAAATAACGCTGTTATACGTTCATCATCTGATCCTGGAATCATGTATTGTcattaaatgtaatcatttgAAGAGACTAATAACAAGAAGTTCTTTGAAAAAAGTGAAGCATCCGAAAGTGTTTCCTGAAGTgtaaactttttctttttttttgctctggaTGCGTTATATTAATTTACATCATGGagaaagtatataaaataaaatatgtatttaatagaattaaaaacagctcataaaatgtaaaaaaaaaaaaaaaaatagtgaagcTAGCATTTATCAGTTGTTATTAAGTTActgtttacatttgtttttgttttttaacaagtGTTCTGTCAGTTATAAATAGATATATTTATCTGTATAATATTCAAAACTGAAAAATTTCCATcctgttattattgttacatTCATTGCTCGCTGTAACTCTGCAACATAAACCATACCAgccacagtctcacacacacaaacacatacacacacgcagcgcacacacacttcccttaTTAGTGAATAAGCCTGTCCTGTTTGTAGAAGCTCCAGAGATAAGATGTGCTTTATGTGCGGTTGAGTGTCTGGAAGATTCTGGATATCTGGAGCATGACGGGGCCAGTCTCTGGATCATTCATCCACTGTGTGCTGTTCAGAGGATTCTCCAGCATGTCCTCAAACGCTGCCGCCAAAAAACGCAATACGACaccaggattaaaaaaaacaccacaaaacaaCCACCAGTCAACAAGTAAAAGTCCTGTCTGGCAAACAAGCAGTGGTTTCTGAGAGACTGCTTTTCAGTACTGCTCTTCATCAAAATCAGTCACGTTCCAAAGGGTCAGCAACGGGTCAGCTTAAAAGGCACGGAGCAGACATGAAATAGCAAAACAGAGCCAACAATGCAGTAAACTGAGAAGACGGGTCATCTCGAGACGGCACATGACCACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU416324 False 1067 lncRNA 0.35 3 7548586 7642268
TU416325 True 3270 lncRNA 0.37 2 7638979 7642268

Neighbor

gene id symbol gene type direction distance location
hmgcra hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 coding downstream 30173 7509917 ~ 7518413 (-)
ttc37 ttc37,LOC107735852 coding downstream 94088 7429317 ~ 7454498 (-)
zgc:194908 mctp1 coding downstream 136209 7410907 ~ 7412377 (-)
mctp1a mctp1,LOC107756292,LOC107703246,LOC107720291 coding downstream 174181 7268166 ~ 7374405 (-)
kiaa0825 kiaa0825 coding downstream 321902 7106152 ~ 7226684 (-)
otpb otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478 coding upstream 156941 7799209 ~ 7802780 (-)
lhfpl2b lhfpl2,LOC108423653 coding upstream 209693 7851961 ~ 7863470 (-)
homer1b homer1b,LOC108255354,LOC108423652,LOC107720277,LOC107703256,LOC107555494,LOC107699726 coding upstream 229924 7872192 ~ 7896685 (-)
mtx3 mtx3,LOC107720223,LOC107703259,LOC107756305 coding upstream 283347 7925615 ~ 7934493 (-)
serinc5 serinc5,LOC107756307,LOC107555497,LOC107699732,LOC107703261 coding upstream 308330 7950598 ~ 7969991 (-)
G351308 NA non-coding downstream 10245 7538038 ~ 7538341 (-)
G351266 NA non-coding downstream 81633 7466596 ~ 7466953 (-)
G351033 NA non-coding downstream 347034 7200746 ~ 7201552 (-)
G350906 NA non-coding downstream 460550 7087714 ~ 7088036 (-)
LOC113537000 NA non-coding downstream 634243 6902293 ~ 6914343 (-)
G351517 NA non-coding upstream 138512 7780780 ~ 7781553 (-)
G351529 ckmt2,ckmt2b,LOC107602239,LOC107665780 non-coding upstream 146806 7789074 ~ 7848880 (-)
G351625 NA non-coding upstream 306932 7949200 ~ 7950503 (-)
G351687 LOC108255524 non-coding upstream 467918 8110186 ~ 8136037 (-)
G351702 NA non-coding upstream 556396 8198664 ~ 8198891 (-)
G350867 NA other downstream 773437 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1196214 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1427627 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 1969605 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 2025305 5362282 ~ 5523281 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 911379 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 928249 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 998674 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 1398359 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 2133698 9775966 ~ 9814416 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G509163 NA non-coding NC_048570.1 CM023224.2 42576553 ~ 42576898 (+)