G351529 (ckmt2,ckmt2b,LOC107602239,LOC107665780)


Basic Information

Item Value
gene id G351529
gene name ckmt2,ckmt2b,LOC107602239,LOC107665780
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7789074 ~ 7848880 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU416514
GCATTACCGTTCGAAGGCTCTAGACAAAATCCACCAAACCCACAGAGCTGTTTTATTAGGAGGATTTATTGGAACGAGATTTCCAGTAAGACCTGCAGTAGTAGTGAAGATTGCAGAGGGCATGGCCTGTGGGTTTCTCATCAGCCTAGCTCCCAACTGGACATACTCAGATGGAAGATGCTCATTTCCTGAACTGAACAATGGGTGCTGGGATTTTGATGTCCTGGcctttctccagtttcttctcaCATTCAATCAGAAAGTTGACCCCATcgacaacacactgaacaagctcgACCTCAGACTTGCCCAGACGGTCAAGGTTAGATATGTCGAAAACATCACCGACAGCAGCAGTGTCCACCCCACCTGTGCCACGCTTCTGTAGCCTGAGGTTATCCAGGATTTTAGAGAAGCGGGGGTCCTTGCTAAGGAGAGGCAGGCGCACATGGACACCAGCTCTTAGTCCAGTGCCCAGGTTGGAGGGGCACGTCAGGATGTAGCCCAGATGCTCATTCCACATGAATTCCCAGCCTCTCTCCTGAATCAGCCTCTCAACCTCTTTTAGTCCCCTGCAGAATCTCTCAAAGACTCTCTTCATGTTGCCACCCTTCTCCATGGAGATGACGCGGGTGTGGTCCTCTTCATTGATCCAGATTAAGAATGTTTTTTCATTGTTGTGCCAGATTCCCCTGGCATCAGGCCAATCACGAGCCATCCCTGCACAAGTCAGCAAGGGTGAGACAGGCTTGTCAAATAGGAAGTGATCATCGATAAGTTGTTGCTGGTCCTTTTCAGACATTTCAGTCAGACTGTAGTATTTGCCTTCAAGATCTCCTTTTAGTCCAGACAAAGCCTGGACGACCACTCTCTCCACTTCACGTCGTTCAGAGCGTGTGCAGGCTGGGGGCAGACTGAGGCCACGGATACTGCGGCCAGTGCGCACACGGGATGACAGCACATACTTGTCATCAAATATCCCAGAGGTGATCTGCACCAGACAGTGACATTGTGTATTACAG
>TU416515
ttttggttttCTGTTTTATTAGGAGGATTTATTGGAACGAGATTTCCAGTAAGACCTGCAGTAGTAGTGAAGATTGCAGAGGGCATGGCCTGTGGGTTTCTCATCAGCCTAGCTCCCAACTGGACATACTCAGATGGAAGATGCTCATTTCCTGAACTGAACAATGGGTGCTGGGATTTTGATGTCCTGGcctttctccagtttcttctcaCATTCAATCAGAAAGTTGACCCCATcgacaacacactgaacaagctcgACCTCAGACTTGCCCAGACGGTCAAGGTTAGATATGTCGAAAACATCACCGACAGCAGCAGTGTCCACCCCACCTGTGCCACGCTTCTGTAGCCTGAGGTTATCCAGGATTTTAGAGAAGCGGGGGTCCTTGCTAAGGAGAGGCAGGCGCACATGGACACCAGCTCTTAGTCCAGTGCCCAGGTTGGAGGGGCACGTCAGGATGTAGCCCAGATGCTCATTCCACATGAATTCCCAGCCTCTCTCCTGAATCAGCCTCTCAACCTCTTTTAGTCCCCTGCAGAATCTCTCAAAGACTCTCTTCATGTTGCCACCCTTCTCCATGGAGATGACGCGGGTGTGGTCCTCTTCATTGATCCAGATTAAGAATGTTTTTTCATTGTTGTGCCAGATTCCCCTGGCATCAGGCCAATCACGAGCCATCCCTGCACAAGTCAGCAAGGGTGAGACAGGCTTGTCAAATAGGAAGTGATCATCGATAAGTTGTTGCTGGTCCTTTTCAGACATTTCAGTCAGACTGTAGTATTTGCCTTCAAGATCTCCTTTTAGTCCAGACAAAGCCTGGACGACCACTCTCTCCACTTCACGTCGTTCAGAGCGTGTGCAGGCTGGGGGCAGACTGAGGCCACGGATACTGCGGCCAGTGCGCACACGGGATGACAGCACATACTTGTCATCAAATATCCCAGAGGTGATCTGCACCAGACAGTGACATTGTGTATTACAG

Function

symbol description
ckmt2b Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in mitochondrion. Is expressed in musculature system; myotome; pectoral fin musculature; retina; and trunk musculature. Orthologous to human CKMT2 (creatine kinase, mitochondrial 2).
ckmt2 Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Located in mitochondrion.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU416514 True 1022 lncRNA 0.50 6 7789074 7793146
TU416515 False 985 lncRNA 0.50 7 7789074 7848880

Neighbor

gene id symbol gene type direction distance location
entr1 sdccag3 coding downstream 161220 7621349 ~ 7627854 (-)
snapc4 NA coding downstream 168512 7607784 ~ 7620562 (-)
hmgcra hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 coding downstream 270661 7509917 ~ 7518413 (-)
ttc37 ttc37,LOC107735852 coding downstream 334576 7429317 ~ 7454498 (-)
zgc:194908 mctp1 coding downstream 376697 7410907 ~ 7412377 (-)
lhfpl2b lhfpl2,LOC108423653 coding upstream 3081 7851961 ~ 7863470 (-)
homer1b homer1b,LOC108255354,LOC108423652,LOC107720277,LOC107703256,LOC107555494,LOC107699726 coding upstream 23312 7872192 ~ 7896685 (-)
mtx3 mtx3,LOC107720223,LOC107703259,LOC107756305 coding upstream 76735 7925615 ~ 7934493 (-)
serinc5 serinc5,LOC107756307,LOC107555497,LOC107699732,LOC107703261 coding upstream 101718 7950598 ~ 7969991 (-)
cdk7 cdk7,LOC107703229,LOC107720222,LOC107699696 coding upstream 124068 7972948 ~ 7986326 (-)
G351517 NA non-coding downstream 7521 7780780 ~ 7781553 (-)
G351362 NA non-coding downstream 146806 7548586 ~ 7642268 (-)
G351384 NA non-coding downstream 152881 7635102 ~ 7636193 (-)
G351308 NA non-coding downstream 250733 7538038 ~ 7538341 (-)
G351266 NA non-coding downstream 322121 7466596 ~ 7466953 (-)
G351625 NA non-coding upstream 100320 7949200 ~ 7950503 (-)
G351687 LOC108255524 non-coding upstream 261306 8110186 ~ 8136037 (-)
G351702 NA non-coding upstream 349784 8198664 ~ 8198891 (-)
G351968 NA non-coding upstream 579392 8428272 ~ 8428551 (-)
G352006 NA non-coding upstream 686338 8535218 ~ 8535431 (-)
card9 card9 other downstream 181608 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 191112 7585472 ~ 7597962 (-)
G350867 NA other downstream 1013925 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1436702 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1668115 6056981 ~ 6120959 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 704767 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 721637 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 792062 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 1191747 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1927086 9775966 ~ 9814416 (-)

Expression


Co-expression Network