G351687 (LOC108255524)


Basic Information

Item Value
gene id G351687
gene name LOC108255524
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8110186 ~ 8136037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU416714
aaaaaataaaaataaaaaaagtcattACAAACTATGCAAGTCTTTTATGTGCATTCACACATATTTACCATTGTGAGGAAGCAAAACAAAAGAGTGTATAAGTGACATACAAGTGGCTCATGGGCAAGTAATGGGCTTTCTTCGTAATGGGCTTTCACTGTCCTGTCTCGCTCTTTGTATCAGTTCAGATTTCCTGATTCTCCTTATCTTGACTCTCCACCATAATCGTTACTTCCACATCTTTTGAAATTTGCACATCTTTCTTCATCTGCACCTCgtcttttgcttttttgtctttttcagccttctcctccttcttcatcTTCCTGTAGAACATGAGGTTTTTCTCAGGGTAGGTCACTTTGGCAAGCGGCAGCTTGTAGATTGTCTTTGTCTCCGTAGTGATCAAGAGGAAAGTGAGTGCAGACAGGCAGAAGGGCCAAGTGCATGCTGGAAGCCCGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU416714 True 463 lncRNA 0.41 2 8110186 8136037

Neighbor

gene id symbol gene type direction distance location
cdk7 cdk7,LOC107703229,LOC107720222,LOC107699696 coding downstream 123860 7972948 ~ 7986326 (-)
serinc5 serinc5,LOC107756307,LOC107555497,LOC107699732,LOC107703261 coding downstream 140195 7950598 ~ 7969991 (-)
mtx3 mtx3,LOC107720223,LOC107703259,LOC107756305 coding downstream 175693 7925615 ~ 7934493 (-)
homer1b homer1b,LOC108255354,LOC108423652,LOC107720277,LOC107703256,LOC107555494,LOC107699726 coding downstream 213501 7872192 ~ 7896685 (-)
lhfpl2b lhfpl2,LOC108423653 coding downstream 246716 7851961 ~ 7863470 (-)
rgmb rgmb coding upstream 12728 8148765 ~ 8161044 (-)
LOC113536957 LOC108256036 coding upstream 64875 8200912 ~ 8269760 (-)
hsf5 NA coding upstream 136624 8272661 ~ 8277467 (-)
si:ch211-117c19.1 LOC108255979,LOC108423640,LOC107577894 coding upstream 147918 8283955 ~ 8290606 (-)
mamdc2a mamdc2 coding upstream 155913 8291950 ~ 8317271 (-)
G351625 NA non-coding downstream 159683 7949200 ~ 7950503 (-)
G351529 ckmt2,ckmt2b,LOC107602239,LOC107665780 non-coding downstream 261306 7789074 ~ 7848880 (-)
G351517 NA non-coding downstream 328633 7780780 ~ 7781553 (-)
G351362 NA non-coding downstream 467918 7548586 ~ 7642268 (-)
G351384 NA non-coding downstream 473993 7635102 ~ 7636193 (-)
G351702 NA non-coding upstream 62627 8198664 ~ 8198891 (-)
G351968 NA non-coding upstream 292235 8428272 ~ 8428551 (-)
G352006 NA non-coding upstream 399181 8535218 ~ 8535431 (-)
G352007 NA non-coding upstream 402402 8538439 ~ 8538650 (-)
G352009 NA non-coding upstream 415194 8551231 ~ 8551459 (-)
card9 card9 other downstream 502720 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 512224 7585472 ~ 7597962 (-)
G350867 NA other downstream 1335037 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1757814 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1989227 6056981 ~ 6120959 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 417610 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 434480 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 504905 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 904590 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1639929 9775966 ~ 9814416 (-)

Expression


Co-expression Network