G351702


Basic Information

Item Value
gene id G351702
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8198664 ~ 8198891 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU416729
GCCAACTGTATCCTCAGATTCCTGGtcttggctaacaggagtggaacccgatgtgatcTGCTCCTGCTGTAGCCCTTTCGTCTCAAGGTCTGacatgttctgagatgcttttctgctcaccacgtttgtaaTGAGTGATTGAGTTAGCAtagcctttttctttctttcagctagAACTTTCAGCTTTTCATTCACGCTTATCGagaaggcatttctgcctgcagaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU416729 True 228 lncRNA 0.46 1 8198664 8198891

Neighbor

gene id symbol gene type direction distance location
rgmb rgmb coding downstream 37620 8148765 ~ 8161044 (-)
erap2 erap2 coding downstream 54202 8133131 ~ 8144462 (-)
lnpep lnpep coding downstream 67378 8114452 ~ 8131286 (-)
cdk7 cdk7,LOC107703229,LOC107720222,LOC107699696 coding downstream 212338 7972948 ~ 7986326 (-)
serinc5 serinc5,LOC107756307,LOC107555497,LOC107699732,LOC107703261 coding downstream 228673 7950598 ~ 7969991 (-)
LOC113536957 LOC108256036 coding upstream 2021 8200912 ~ 8269760 (-)
hsf5 NA coding upstream 73770 8272661 ~ 8277467 (-)
si:ch211-117c19.1 LOC108255979,LOC108423640,LOC107577894 coding upstream 85064 8283955 ~ 8290606 (-)
mamdc2a mamdc2 coding upstream 93059 8291950 ~ 8317271 (-)
LOC113537216 c22h9orf135 coding upstream 131131 8330022 ~ 8336956 (-)
G351687 LOC108255524 non-coding downstream 62627 8110186 ~ 8136037 (-)
G351625 NA non-coding downstream 248161 7949200 ~ 7950503 (-)
G351529 ckmt2,ckmt2b,LOC107602239,LOC107665780 non-coding downstream 349784 7789074 ~ 7848880 (-)
G351517 NA non-coding downstream 417111 7780780 ~ 7781553 (-)
G351362 NA non-coding downstream 556396 7548586 ~ 7642268 (-)
G351968 NA non-coding upstream 229381 8428272 ~ 8428551 (-)
G352006 NA non-coding upstream 336327 8535218 ~ 8535431 (-)
G352007 NA non-coding upstream 339548 8538439 ~ 8538650 (-)
G352009 NA non-coding upstream 352340 8551231 ~ 8551459 (-)
G352010 NA non-coding upstream 352689 8551580 ~ 8551784 (-)
card9 card9 other downstream 591198 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 600702 7585472 ~ 7597962 (-)
G350867 NA other downstream 1423515 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1846292 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 2077705 6056981 ~ 6120959 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 354756 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 371626 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 442051 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 841736 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1577075 9775966 ~ 9814416 (-)

Expression


Co-expression Network