hint2 (hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271)


Basic Information

Item Value
gene id hint2
gene name hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8553647 ~ 8556676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU416987
taaatatttctttttcttttttgatttcTAAATTGTAAATCAGTGTGAATATGCTAGAGTGTAACCTCACTGCTCGTTGCTATTGGTGCATTACATGTCACTCCACAAGATCCTAAACTGCAAATAGGCATTTAACCCTGACCTAGTTTCCTCTGCTGTTAAACCTGTACCAAGCTATCCCTAGTGTTCAGACATTTTATCCGGTCCTTGACCCTACACACGGCCACTGTGCCAACTAATTCATCAGTTGCACGAAAAATatgaagagaaaaataataatctagATAACTGCAGATGTATAATGATAGTAAGGCATTACTCTGATCTTAAGTCTTCAACACTTCAGCTCATGTTGTTTTGGAGGTAACATTATTGCTTTACTATATTTACATTCGTTcgtttggcagatgcttttctTTAAAGTGTGCACATAAGGCAGAATACAGCACAGAAATGTGCAGTTGAGGAGTAAGAGTCTTGCTCAAGGCCCAATAGTGT
>XM_026931298.2
CGGACCTGCGCATGCGTGTAGTGTATTAGGCGAAGTGGAGTGAAACATTTTCACGGTGCAATGTTCCTGCGCAGAGTTATACAGAGCCGAGGCTTCTCGTCGCCATTTGTGTATAATTTACAGCGACGTGCTATAACAGTccagAAACTCTGTCTGTCTTCACACAATGATGAAGTTCACCTGGCGGAGGAAGCCAGCAAGAAGTATGGAAGTCCTGCTCCGACTATATTTTCCAAAATTCTTGACAAAACTATTCCTGCAGACATAATTTATGAAGACAACAAGTGTTTGGCATTTCGGGACATCAGTCCCCAGGCTCCTGTGCATTTCCTGGTTATTCCCAGAACCCCTATCCCAAGGATAAGTGAAGCTCATGACGACGATACACCGctCCTTGGGCATCTCTTGATAGTAGCAAAAAAACTGGCAAAGAAAGAAGGATTAACTGAGGGATACAGATTGGTCATCAATGATGGGAAACATGGGGCTCAGTCTGTGTATCACCTGCACCTTCATGTCCTTGGAGGGCGACAGATGCAGTGGCCTCCAGGATAGATGAACACACCATCCACTAGTGTTTAATCATGAAGAGAATATATattcaatttaaatatataGCTAGTTACagcatatatttaaaataataaaaataatagaaattataGATGAAGAATGTGGAAAGcaataaggtttttttttttcctgaaaaacaaagagaaattgACCAACataacacagtaataataaagtaaataatttttttaaaatgggtgTTGCAGATTGATGGATTGTGGAGTATAGtttctaaatatttctttttcttttttgatttcTAAATTGTAAATCAGTGTGAATATGCTAGAGTGTAACCTCACTGCTCGTTGCTATTGGTGCATTACATGTCACTCCACAAGATCCTAAACTGCAAATAGGCATTTAACCCTGACCTAGTTTCCTCTGCTGTTAAACCTGTACCAAGCTATCCCTAGTGTTCAGACATTTTATCCGGTCCTTGACCCTACACACGGCCACTGTGCCAACTAATTCATCAGTTGCACGAAAAATatgaagagaaaaataataatctagATAACTGCAGATGTATAATGATAGTAAGGCATTACTCTGATCTTAAGTCTTCAACACTTCAGCTCATGTTGTTTTGGAGGTAACATTATTGCTTTACTATATTTACATTCGTTcgtttggcagatgcttttctTTAAAGTGTGCACATAAGGCAGAATACAGCACAGAAATGTGCAGTTGAGGAGTAAGAGTCTTGCTCAAGGCCCAATAGTGTCTCCCTGCACAGTCCTGGGCTGGTATGTATAAAGGTTCTGAGAATTGCTCAAAAATGCGAAGTCTAgttaagac

Function

symbol description
hint2 Predicted to enable hydrolase activity. Predicted to be active in mitochondrion. Is expressed in brain; head; inner ear; and somite. Orthologous to human HINT2 (histidine triad nucleotide binding protein 2).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02503 HINT1, hinT, hit; histidine triad (HIT) family protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU416987 False 498 lncRNA 0.38 1 8553721 8554218
XM_026931298.2 True 1377 mRNA 0.39 5 8553647 8556676

Neighbor

gene id symbol gene type direction distance location
LOC113537023 LOC108255920,LOC108423573,LOC107703272,LOC107567144,LOC107699749 coding downstream 3677 8539235 ~ 8549970 (-)
LOC113537187 LOC108255404 coding downstream 26428 8519235 ~ 8527219 (-)
LOC113537102 naaa coding downstream 44849 8500498 ~ 8508798 (-)
LOC113537101 ppef2,LOC108255928 coding downstream 53219 8487230 ~ 8500428 (-)
zgc:158260 fam47e coding downstream 96458 8451585 ~ 8457189 (-)
emb emb coding upstream 5283 8561959 ~ 8568130 (-)
LOC113537140 secisbp2 coding upstream 46525 8603201 ~ 8612620 (-)
tor2a tor2a coding upstream 77844 8634520 ~ 8640745 (-)
col27a1b col27a1,LOC108256032,LOC107699687 coding upstream 125456 8682132 ~ 8747709 (-)
LOC113536867 NA coding upstream 207540 8764216 ~ 8773109 (-)
G352011 NA non-coding downstream 1525 8551921 ~ 8552122 (-)
G352010 NA non-coding downstream 1863 8551580 ~ 8551784 (-)
G352009 NA non-coding downstream 2188 8551231 ~ 8551459 (-)
G352007 NA non-coding downstream 14997 8538439 ~ 8538650 (-)
G352006 NA non-coding downstream 18216 8535218 ~ 8535431 (-)
G352035 NA non-coding upstream 70754 8627430 ~ 8628321 (-)
G352036 NA non-coding upstream 71737 8628413 ~ 8629092 (-)
G352068 NA non-coding upstream 174407 8731083 ~ 8733868 (-)
LOC113536901 NA non-coding upstream 414956 8971632 ~ 8976888 (-)
G352491 NA non-coding upstream 625472 9182148 ~ 9184754 (-)
card9 card9 other downstream 946181 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 955685 7585472 ~ 7597962 (-)
G350867 NA other downstream 1778498 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 2201275 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 2432688 6056981 ~ 6120959 (-)
malt1 malt1 other upstream 13841 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 84266 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 483951 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1219290 9775966 ~ 9814416 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 1813486 10370162 ~ 10411686 (-)

Expression


Co-expression Network