malt1 (malt1)


Basic Information

Item Value
gene id malt1
gene name malt1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8570517 ~ 8586011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU417110
AGCAGTGTTTCACCTGTAGACTGCTAATGTGTAGCAGGGTGAGGCGTTTTGTTTTCCCTTTTCTCGGACTAGTTTCGGGTGATTGTGTTCTTTAAAACCGACTCGTTCATAGCTCGACCAATGGCTGCTCTTTTCGGTTTTGCGTTTAAGATGTGTTTGACATTTTTTCAGTCTTAGGATAAAGTACACACCGAGTCATTTCCGTCCTTAGCTGAGTGCAGTAAAGTCACAAAGTGCAGTAAAGCTTCAGGCCCCAGCATCTAAGAGCTTCTGTTTTTCCAGCCCATACAACGCTCCTGATTAACACAATGTCCCAGGATTCTTATGACAGCTCAATGAATATCAATTTTCTAAAAGAATCCGTGTTAAAAAGACTCGCTGAGGCTCTTGATAAAGCAAACAGTAAAGGATGGAGAAAACTCGGGGAGACTGTGAACAGTGACCGGCGCTTCAGAGTCAGtttgggGGACATGGAGATGTGCTCTCTGAAGGTGTTGGAGGTGGAGGGCAGCCCATCTCGCAGTTTGCTGAGACTCATGGGAGACCGAGGCTGCACAGTGGGGGACCTGGTGGAGTTTCTAAAAATGATGGGACACACTGAAGCCCTTCAGTGTCTTAAATCAGG
>XM_026931504.2
TATGCCGAATAGCGAGCTATTTGGGACTGTGCCATGTTCTGAGGCGAAGTGGATTTCCCCACCTCGACCCGTGCAAGCAAACAGCAGCAGTGTTTCACCTGTAGACTGCTAATGTGTAGCAGGGTGAGGCGTTTTGTTTTCCCTTTTCTCGGACTAGTTTCGGGTGATTGTGTTCTTTAAAACCGACTCGTTCATAGCTCGACCAATGGCTGCTCTTTTCGGTTTTGCGTTTAAGATGTGTTTGACATTTTTTCAGTCTTAGGATAAAGTACACACCGAGTCATTTCCGTCCTTAGCTGAGTGCAGTAAAGTCACAAAGTGCAGTAAAGCTTCAGGCCCCAGCATCTAAGAGCTTCTGTTTTTCCAGCCCATACAACGCTCCTGATTAACACAATGTCCCAGGATTCTTATGACAGCTCAATGAATATCAATTTTCTAAAAGAATCCGTGTTAAAAAGACTCGCTGAGGCTCTTGATAAAGCAAACAGTAAAGGATGGAGAAAACTCGGGGAGACTGTGAACAGTGACCGGCGCTTCAGAGTCAGtttgggGGACATGGAGATGTGCTCTCTGAAGGTGTTGGAGGTGGAGGGCAGCCCATCTCGCAGTTTGCTGAGACTCATGGGAGACCGAGGCTGCACAGTGGGGGACCTGGTGGAGTTTCTAAAAATGATGGGACACACTGAAGCCCTTCAGTGTCTTAAATCAGGGATTCAGATCCTCATCCAGCCTCAGTCTGTGGCTGTGATAGTTGGACACAGCGTTCGCCTCAGCTGCTATGCTGCTGCCACCTCGGGCTCCATCATGCAGTACCAGTGGTTCAAGGCAAAAGAAGAGGTTCCTGGTAGTTCTTCTTCAGACCTTGTGCTGAGTCCTGTCCAGCTGAGTGACGCTGGCTTCTACATCTGCAGGGTGAACTGCGGTGACGCCTTTGAGTTTAGCCACTGGGTTCAGGTGGATGTGTTGGATGTCATGCCAACATATGGGTTGATGTCTATTCCTTCCGAGGGAAGACTAAGAGTGGTGATACAGCCCAAGCCTAAGTCTTTGCTAGTGGGAGATGCTCTGTATCTGGAATGTGGAGCTGTGGGAAAACCGCTGCCACGCTACCAGTGGTACAGAAATGGGGCTCCTTTAAAGAATGCCACCAAGCGGAAACTCAGTATCCCGTATTTGATGTTGGAGCACCAGGGACGATATCGCTGTGAAATCTCCTGCAGCAATGAGCGGACCTGGAGTAATGAAGTAGACATCGTTGTAGTAAAAGGGCCGAGGACTACCTTCCAGTTTTCAGGGGCAACGGAATGCTCTGAAGatgacTTCATAGCCATGGGACAGTATAACAGTCTCGAGAAGCCTTACGCCACAGACAAAGTGGCCTTGCTGATAGGGAACATGTCGTATCAGAACCACCCTCAGCTGAAGGCTCCCATGGTGGATGTGTACGACCTCACCAACCTGCTTCGACAGCTCAACTTTAAAGTGGTCTCACTGCTGGACCTGACTGAGTCAGAGATGCGCAACGCTGTAGAGGAGTTTCTCTCCCTGCTGCACAAAGGCGTTTATGGCTTGTTGTACTACGCTGGACATGGTTATGAGAACTTTGGAAATAGCTTCATGGTGCCGGTTGATGCCCCAAATCCGTACCGATCAGCAAACTGCTTGTGTGTGCAAAGCATTCTGAAACTGATGCAGGAAAAAGAGACTGGTCTCAATGTCTTCCTTCTTGATATGTGCAGGAAAAGAAACGTTCATGATAAGGACATGCCAAATGTTATGCTCAAGGTCACAGCCAACATCGTGTTTGGTTATGCTACCTGTCAAGATGCAGAAGCTTTTGAGTTAAGCTCCAGTGGACTCGCCAATGGCGTCTTCATCAAGTTTCTAAAAGAGCGCCTCCTGGAAGATGAAAAAATTACTGTTCTCCTGGACAGCGTGGCAGAGGACATGGGCCAGTTTGATCCCACTAAGGGGAAACAGGCTCTTGAGATCCGCAGCAGCCTGTCAGAGAGACGCTCCCTGACTGACCCTATCCTGCCTGAAGAGTGTTCAGACGTGGTCCAAGCTCACAGCCTCCTCTGGGCTAAAGCACACGAGCTACCAGAAAGCATGAGTCTGGACTTTGAATGTGGCGTGCAGCTAAAGATGGGCTTTGCGGCCGAGTTCTCCAATGTGCTGGTCATCTACACCAACATTGTAAAGAAGCCAGTGGAGATGTCCTCGTGTCAAGCTCACCTCATCAACCTTTCAGACCTCGACCCTAAGATGATGAATAAGGAAACCCCAGAGGAAACAGGAAGTTATCTGCTCTCAGAAAGTCTTCCCCAGCACTGCCTTTATACCAGACTCAGTTCCCTACAGAAGCTTAAGgagaacctggtcttcactgtctgtctgcagGCTGAATTTACATCTCTAGATGAGCAGGTACAATGGACCAAAGAGGTGGACATCGGCAAGCCCCTAATAGCAAAGCTGGACCTGCACCGGCCCACCAGGAGGAACAGCTGTCAGCAGACATGCCTCATGCCCCATAGCCCATCCACCAGCCCAAGCCCAAGCCCAGGAGCCGAGCGACTACTTGTCCACGGGCTCCCCTGCCACTACCCACAGTCCAGCAGCCCCTTCCTTCACGTCTGTGATCCCTTGCAAGGAGCCGCTGGGGCTTATGGTGACTCTCTGCATGATGATTATGCATTTCACtatgaaaataattcatattcacCTATTATGCGTCTACCCAGTGTGCCCATTGAAACCACTGACGACATTGAAGATATGCAGAATAGGTTCATGGACAGCTTACATTTATACAACCTGCCTTAAACTGGGGAGCCTGGGACAAAAAACTGggaaagaaaatatttacttacttgtcttagattatgtaatGTTGTTAAATATCAGCTGTTATgtataaattgtaatattttctgTTGTGATATTTTCTGTTACACAGAATGCACTTATAGAATATTATATGGTATATCTTGAGTAATATTTGAATTTGATGGTGGTTTACAGTCCTTACGCATGTATGTAATAGAAGCATAAATTAGCCCATTTGTACCAAAGTATTACTGGTGAGCATTTAACAGGTTTAATATGTATTTTCctaaatgtttgtgttgtttttgataAGGAAAGctgcatgtgaaaaatgctACATGGCATCATTAGTTAGAATatcattattaaaatttcatattcTGAATAAGTGAGCAAGCA
>XM_026931505.2
TGCCGAATAGCGAGCTATTTGGGACTGTGCCATGTTCTGAGGCGAAGTGGATTTCCCCACCTCGACCCGTGCAAGCAAACAGCAGCAGTGTTTCACCTGTAGACTGCTAATGTGTAGCAGGGTGAGGCGTTTTGTTTTCCCTTTTCTCGGACTAGTTTCGGGTGATTGTGTTCTTTAAAACCGACTCGTTCATAGCTCGACCAATGGCTGCTCTTTTCGGTTTTGCGTTTAAGATGTGTTTGACATTTTTTCAGTCTTAGGATAAAGTACACACCGAGTCATTTCCGTCCTTAGCTGAGTGCAGTAAAGTCACAAAGTGCAGTAAAGCTTCAGGCCCCAGCATCTAAGAGCTTCTGTTTTTCCAGCCCATACAACGCTCCTGATTAACACAATGTCCCAGGATTCTTATGACAGCTCAATGAATATCAATTTTCTAAAAGAATCCGTGTTAAAAAGACTCGCTGAGGCTCTTGATAAAGCAAACAGTAAAGGATGGAGAAAACTCGGGGAGACTGTGAACAGTGACCGGCGCTTCAGAGTCAGtttgggGGACATGGAGATGTGCTCTCTGAAGGTGTTGGAGGTGGAGGGCAGCCCATCTCGCAGTTTGCTGAGACTCATGGGAGACCGAGGCTGCACAGTGGGGGACCTGGTGGAGTTTCTAAAAATGATGGGACACACTGAAGCCCTTCAGTGTCTTAAATCAGGGATTCAGATCCTCATCCAGCCTCAGTCTGTGGCTGTGATAGTTGGACACAGCGTTCGCCTCAGCTGCTATGCTGCTGCCACCTCGGGCTCCATCATGCAGTACCAGTGGTTCAAGGCAAAAGAAGAGGTTCCTGGTAGTTCTTCTTCAGACCTTGTGCTGAGTCCTGTCCAGCTGAGTGACGCTGGCTTCTACATCTGCAGGGTGAACTGCGGTGACGCCTTTGAGTTTAGCCACTGGGTTCAGGTGGATGTGTTGGATGTCATGCCAACATATGGGTTGATGTCTATTCCTTCCGAGGGAAGACTAAGAGTGGTGATACAGCCCAAGCCTAAGTCTTTGCTAGTGGGAGATGCTCTGTATCTGGAATGTGGAGCTGTGGGAAAACCGCTGCCACGCTACCAGTGGTACAGAAATGGGGCTCCTTTAAAGAATGCCACCAAGCGGAAACTCAGTATCCCGTATTTGATGTTGGAGCACCAGGGACGATATCGCTGTGAAATCTCCTGCAGCAATGAGCGGACCTGGAGTAATGAAGTAGACATCGTTGTAGatgacTTCATAGCCATGGGACAGTATAACAGTCTCGAGAAGCCTTACGCCACAGACAAAGTGGCCTTGCTGATAGGGAACATGTCGTATCAGAACCACCCTCAGCTGAAGGCTCCCATGGTGGATGTGTACGACCTCACCAACCTGCTTCGACAGCTCAACTTTAAAGTGGTCTCACTGCTGGACCTGACTGAGTCAGAGATGCGCAACGCTGTAGAGGAGTTTCTCTCCCTGCTGCACAAAGGCGTTTATGGCTTGTTGTACTACGCTGGACATGGTTATGAGAACTTTGGAAATAGCTTCATGGTGCCGGTTGATGCCCCAAATCCGTACCGATCAGCAAACTGCTTGTGTGTGCAAAGCATTCTGAAACTGATGCAGGAAAAAGAGACTGGTCTCAATGTCTTCCTTCTTGATATGTGCAGGAAAAGAAACGTTCATGATAAGGACATGCCAAATGTTATGCTCAAGGTCACAGCCAACATCGTGTTTGGTTATGCTACCTGTCAAGATGCAGAAGCTTTTGAGTTAAGCTCCAGTGGACTCGCCAATGGCGTCTTCATCAAGTTTCTAAAAGAGCGCCTCCTGGAAGATGAAAAAATTACTGTTCTCCTGGACAGCGTGGCAGAGGACATGGGCCAGTTTGATCCCACTAAGGGGAAACAGGCTCTTGAGATCCGCAGCAGCCTGTCAGAGAGACGCTCCCTGACTGACCCTATCCTGCCTGAAGAGTGTTCAGACGTGGTCCAAGCTCACAGCCTCCTCTGGGCTAAAGCACACGAGCTACCAGAAAGCATGAGTCTGGACTTTGAATGTGGCGTGCAGCTAAAGATGGGCTTTGCGGCCGAGTTCTCCAATGTGCTGGTCATCTACACCAACATTGTAAAGAAGCCAGTGGAGATGTCCTCGTGTCAAGCTCACCTCATCAACCTTTCAGACCTCGACCCTAAGATGATGAATAAGGAAACCCCAGAGGAAACAGGAAGTTATCTGCTCTCAGAAAGTCTTCCCCAGCACTGCCTTTATACCAGACTCAGTTCCCTACAGAAGCTTAAGgagaacctggtcttcactgtctgtctgcagGCTGAATTTACATCTCTAGATGAGCAGGTACAATGGACCAAAGAGGTGGACATCGGCAAGCCCCTAATAGCAAAGCTGGACCTGCACCGGCCCACCAGGAGGAACAGCTGTCAGCAGACATGCCTCATGCCCCATAGCCCATCCACCAGCCCAAGCCCAAGCCCAGGAGCCGAGCGACTACTTGTCCACGGGCTCCCCTGCCACTACCCACAGTCCAGCAGCCCCTTCCTTCACGTCTGTGATCCCTTGCAAGGAGCCGCTGGGGCTTATGGTGACTCTCTGCATGATGATTATGCATTTCACtatgaaaataattcatattcacCTATTATGCGTCTACCCAGTGTGCCCATTGAAACCACTGACGACATTGAAGATATGCAGAATAGGTTCATGGACAGCTTACATTTATACAACCTGCCTTAAACTGGGGAGCCTGGGACAAAAAACTGggaaagaaaatatttacttacttgtcttagattatgtaatGTTGTTAAATATCAGCTGTTATgtataaattgtaatattttctgTTGTGATATTTTCTGTTACACAGAATGCACTTATAGAATATTATATGGTATATCTTGAGTAATATTTGAATTTGATGGTGGTTTACAGTCCTTACGCATGTATGTAATAGAAGCATAAATTAGCCCATTTGTACCAAAGTATTACTGGTGAGCATTTAACAGGTTTAATATGTATTTTCctaaatgtttgtgttgtttttgataAGGAAAGctgcatgtgaaaaatgctACATGGCATCATTAGTTAGAATatcattattaaaatttcatattcTGAATAAGTGAGCAAGCA

Function

symbol description
malt1 Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within positive regulation of NF-kappaB transcription factor activity and proteolysis. Human ortholog(s) of this gene implicated in immunodeficiency 12; lymphoma; and non-Hodgkin lymphoma. Orthologous to human MALT1 (MALT1 paracaspase).

NR:

description
mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K07369 MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU417110 False 625 TUCP 0.46 2 8580900 8585926
XM_026931504.2 True 3228 mRNA 0.47 17 8570517 8586011
XM_026931505.2 False 3172 mRNA 0.47 16 8570517 8586009

Neighbor

gene id symbol gene type direction distance location
emb emb coding downstream 2387 8561959 ~ 8568130 (-)
LOC113537023 LOC108255920,LOC108423573,LOC107703272,LOC107567144,LOC107699749 coding downstream 20547 8539235 ~ 8549970 (-)
LOC113537187 LOC108255404 coding downstream 43298 8519235 ~ 8527219 (-)
LOC113537102 naaa coding downstream 61719 8500498 ~ 8508798 (-)
LOC113537101 ppef2,LOC108255928 coding downstream 70089 8487230 ~ 8500428 (-)
LOC113537140 secisbp2 coding upstream 17190 8603201 ~ 8612620 (-)
tor2a tor2a coding upstream 48509 8634520 ~ 8640745 (-)
col27a1b col27a1,LOC108256032,LOC107699687 coding upstream 96121 8682132 ~ 8747709 (-)
LOC113536867 NA coding upstream 178205 8764216 ~ 8773109 (-)
LOC113536953 LOC108255390 coding upstream 316171 8902182 ~ 8907720 (-)
G352011 NA non-coding downstream 18395 8551921 ~ 8552122 (-)
G352010 NA non-coding downstream 18733 8551580 ~ 8551784 (-)
G352009 NA non-coding downstream 19058 8551231 ~ 8551459 (-)
G352007 NA non-coding downstream 31867 8538439 ~ 8538650 (-)
G352006 NA non-coding downstream 35086 8535218 ~ 8535431 (-)
G352035 NA non-coding upstream 41419 8627430 ~ 8628321 (-)
G352036 NA non-coding upstream 42402 8628413 ~ 8629092 (-)
G352068 NA non-coding upstream 145072 8731083 ~ 8733868 (-)
LOC113536901 NA non-coding upstream 385621 8971632 ~ 8976888 (-)
G352491 NA non-coding upstream 596137 9182148 ~ 9184754 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 13841 8553647 ~ 8556676 (-)
card9 card9 other downstream 963051 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 972555 7585472 ~ 7597962 (-)
G350867 NA other downstream 1795368 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 2218145 6346663 ~ 6352372 (-)
sh2d3cb sh2d3c other upstream 54931 8640942 ~ 8654612 (-)
LOC113536894 ttc16 other upstream 454616 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1189955 9775966 ~ 9814416 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 1784151 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 1923060 10509071 ~ 10517205 (-)

Expression


Co-expression Network