sh2d3cb (sh2d3c)


Basic Information

Item Value
gene id sh2d3cb
gene name sh2d3c
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 8640942 ~ 8654612 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU417115
ttaaatcaaattttCTGCTTACTATTTAGCACTGGGTGTACTATTGACCCAAGTCACCTCTTTTGAGTTTAgagttgtaaaataaaatgtaaaatacccAATACACAATATGTTCAGTTCAGGTTTTAGCaacataaacaatatttattgaATCAGACACACAAAACCAACACATGCTCAGGGATATTCATGGCAGGTCTtagtataaatgaaatattatacaAGGTCTAAAAAGACCTTTTTTGGTTAAGATCTCCAAATATAAGAtgctttttaatacatttcaaaatGGTATAAGCATAATTTGTGTAATAAAGCCATTATATTTAAGAATGTTATTATTGTGTGAATACCATCATGCAGATCTGTGGATATAATGCAAGATTTCATGTCTTTGTGATAATAATATGGGTAAAGGAGTGAGTCTAGAGTGTGAAATCATACTGATGAttgaataattttaatttctgaGCTAGACAAGGTGTATTTATCTAATTATGTATCAGTTGAACAGCACAGGATTTCCTCAGGCTCAGACAC
>XM_026931393.2
CACTGGCGGGGTTAGAAGAAGCCCCGCGCTACAAGTGTCAAATCTGACAGAAGACACCGACGCGCTCGTGCACATGCCGCCTGACCATGACATTACCGGCGCTTAATACACTACTGCTCCGTCTGATTATTCCGTAAGTCATTCTGATTCCATGGAAAACAGAGGTGAATATGTAATGTTTTCAAAAGAGACGTGCCTGCTGGACACTGCATCAGAGAAACTGAGGAAAGAGCTGGAGGAAGAGCTGAAACTCAGCAGCCACAACATACAAAGTCATGGCTGGTACCATGGACGTATACCTTGGGAGGTTTCAGAGTCTCTGGTGCTACAGGATGGGGATTTCCTGATTCGCGATTCTTTGACCAGTTTGGGAGATTACGTCCTAACCTGCCGCTGGAATCAGAAACCTCTCCACTTCTTGATCAGCAAAGTTCTGCTGAGATCCAGTGACACATACACACGGATACAGTATGTTCTGGAAGGAGAGCAGTTTGACTCCATTCCAGCGTTGGTCCATTTCTATGTGGGCGGCCAGACGCCACTTACTCAACACAGCGGCGCACACGTGATTTCCCCAGTCAACAGAACTGTACCACTGCGCTCTCTGGAGACAATGTTTGGTCAGACTAGTAAGGAGGGGACACCATTAAACTCACCTGTGCACAGGAAGGGAAGTTTAGGAATGACAGAGGCTCTGGCATTTGAGTTAATAAACCCTCAGAGGGAGGCAGTCAAGAGCTTCGTTGGAAGCTTGGAACAGCGTGTTGTAGTGACGTCATccccaaccccactgaacacacTCTACGGACGTAGAAAAAGTCCATCACGCAATAGGAAGTTTGTTGTGGTCCCTTCATCGCCCGTTTTGCAAAGACCCGATGACATGCACCTTTGTACTTCTCCAACTGAGAGTGCTGTCATCTATTTGGAGCCTACAGACAACACATGGTCTCCCAGCACGGAGTCCTGTCAAAGCACTGCTGCAGACCCCAGTGACCTGCAATCCAGCACAGGCCTTTATCCACACAGCCTTGCTCGTATACAGTCACCCTTCAGTGGACAAGAGGACCAGACAGTGCAGGGCTTCATGGACGAGGACAATGAGGATTATTTAATGCCACTTGTAATTGAATCAGCCTCCAGTTTCAGACCCAGCACGTACCAGTCCCCGCTTCTACCCGCAGAAAATAAACCACTAGAAGCAAGAGTGTTAAGGAGAGCGAAGGAGGTGCTTATAGATGCTGATACAAAGACGATGGCCATGCACATCACCAAAATTGACTGCATGGTTGCTCGTATATTGGATTTATCCAGTGAGAATACAAGAGGGATGGCTGTGAGCTCGGGAATGGAGCTGCTCACACTTCCACATGGCCACCATCTCCGACAAGACCTGCTGGAAAGGTTCTATACCATGTCCATCATGCTGGCTATGGTGCTGTTGGGTTGCACGGGCAGTGTGGAGGAAAGAGGCTCCCTACTGCACAGAATTATCTCACTGGCATCTGAGCTGAAGACTAACCTGGGCAATATGTTTGGCTTTGCTGCAGTTATGAGAGTCCTAGAACTTCCACAGATTGTTCGGTTGGATGAGACGTGGATGGCTTTAAggcaaaaatacacagaaagtgCAGTTCTGTATGAGAAAACCTTGAGGCCCTCTTTGAAGAGAATGAATGATGGAAAAGAGCCCTGTGACCCATCGGAGATGACTGTCCCTCATGTGCTCCCTCTGCTGCTCCTGCTTGAGAAGAGTGCCGTGATTCTTGAAGGGTCTGAGTCCTGGGAGAGTCTCGACTCTGGAATGGACTCTTTGCTGTGTCATTTAAATGCTGCTCGTACCATTGCATGCCATGGAGAAACCTACTGTTCTAATGCCAAGGCAAAACTACAGGGTTTCCATGAGCAGCCAGACGTACTAGAAGTTTTCCTGACTGAGTTCCAGATGCGTCTGCTGTGGGGGAGCCGGGGAGCGGAGGCGAACAGGGAGGAGCGCTATGAGAAATTTGACAAAGTGCTAACAGCCCTGTCCAACAGACTGGAACCTTCTCAGCAGGCAGAATGATACACATTGCACATGTCTCACTCTGAAATgtgtatatatctttttttttttttttttttttgatgaatgcCAAGGGTGTACATAGAGTAGAATGATGCAACTCTGTATGGCGGAATAACATTTcaaattcttttaaacttttacatGGATTTGTAAATAATGTAGATATAAATACTATTCAGATTTGTATTTCAAAGTATGATTAACATTATTTTGGTTTACTTCtattaaataaatctatcagtcatttctttataaattggtttataaattatgttttattttgtcataaCCTATATAAGCCTTTATACTGACTGTTTTATGATGTCAcaaccttcttttttttctcagattaaACCGGTTCAGTTGTGCGTCCTTGCattgtttgttttaatcaaacattaaatcaaattttCTGCTTA
>XM_026931394.2
TGTCCGCACTGACAGAGAATGAACAAACAGCAATTCTAAAATACCTAGTCTTATCAGTTTATTAATTATGGACAGTGATTATTAATCCATGGATTTCTTAGATTGGTTTTGGATATTGAGTAACAGTCTTCTGATTCCTCAAACTTGTCAGTCATTCTGATTCCATGGAAAACAGAGGTGAATATGTAATGTTTTCAAAAGAGACGTGCCTGCTGGACACTGCATCAGAGAAACTGAGGAAAGAGCTGGAGGAAGAGCTGAAACTCAGCAGCCACAACATACAAAGTCATGGCTGGTACCATGGACGTATACCTTGGGAGGTTTCAGAGTCTCTGGTGCTACAGGATGGGGATTTCCTGATTCGCGATTCTTTGACCAGTTTGGGAGATTACGTCCTAACCTGCCGCTGGAATCAGAAACCTCTCCACTTCTTGATCAGCAAAGTTCTGCTGAGATCCAGTGACACATACACACGGATACAGTATGTTCTGGAAGGAGAGCAGTTTGACTCCATTCCAGCGTTGGTCCATTTCTATGTGGGCGGCCAGACGCCACTTACTCAACACAGCGGCGCACACGTGATTTCCCCAGTCAACAGAACTGTACCACTGCGCTCTCTGGAGACAATGTTTGGTCAGACTAGTAAGGAGGGGACACCATTAAACTCACCTGTGCACAGGAAGGGAAGTTTAGGAATGACAGAGGCTCTGGCATTTGAGTTAATAAACCCTCAGAGGGAGGCAGTCAAGAGCTTCGTTGGAAGCTTGGAACAGCGTGTTGTAGTGACGTCATccccaaccccactgaacacacTCTACGGACGTAGAAAAAGTCCATCACGCAATAGGAAGTTTGTTGTGGTCCCTTCATCGCCCGTTTTGCAAAGACCCGATGACATGCACCTTTGTACTTCTCCAACTGAGAGTGCTGTCATCTATTTGGAGCCTACAGACAACACATGGTCTCCCAGCACGGAGTCCTGTCAAAGCACTGCTGCAGACCCCAGTGACCTGCAATCCAGCACAGGCCTTTATCCACACAGCCTTGCTCGTATACAGTCACCCTTCAGTGGACAAGAGGACCAGACAGTGCAGGGCTTCATGGACGAGGACAATGAGGATTATTTAATGCCACTTGTAATTGAATCAGCCTCCAGTTTCAGACCCAGCACGTACCAGTCCCCGCTTCTACCCGCAGAAAATAAACCACTAGAAGCAAGAGTGTTAAGGAGAGCGAAGGAGGTGCTTATAGATGCTGATACAAAGACGATGGCCATGCACATCACCAAAATTGACTGCATGGTTGCTCGTATATTGGATTTATCCAGTGAGAATACAAGAGGGATGGCTGTGAGCTCGGGAATGGAGCTGCTCACACTTCCACATGGCCACCATCTCCGACAAGACCTGCTGGAAAGGTTCTATACCATGTCCATCATGCTGGCTATGGTGCTGTTGGGTTGCACGGGCAGTGTGGAGGAAAGAGGCTCCCTACTGCACAGAATTATCTCACTGGCATCTGAGCTGAAGACTAACCTGGGCAATATGTTTGGCTTTGCTGCAGTTATGAGAGTCCTAGAACTTCCACAGATTGTTCGGTTGGATGAGACGTGGATGGCTTTAAggcaaaaatacacagaaagtgCAGTTCTGTATGAGAAAACCTTGAGGCCCTCTTTGAAGAGAATGAATGATGGAAAAGAGCCCTGTGACCCATCGGAGATGACTGTCCCTCATGTGCTCCCTCTGCTGCTCCTGCTTGAGAAGAGTGCCGTGATTCTTGAAGGGTCTGAGTCCTGGGAGAGTCTCGACTCTGGAATGGACTCTTTGCTGTGTCATTTAAATGCTGCTCGTACCATTGCATGCCATGGAGAAACCTACTGTTCTAATGCCAAGGCAAAACTACAGGGTTTCCATGAGCAGCCAGACGTACTAGAAGTTTTCCTGACTGAGTTCCAGATGCGTCTGCTGTGGGGGAGCCGGGGAGCGGAGGCGAACAGGGAGGAGCGCTATGAGAAATTTGACAAAGTGCTAACAGCCCTGTCCAACAGACTGGAACCTTCTCAGCAGGCAGAATGATACACATTGCACATGTCTCACTCTGAAATgtgtatatatctttttttttttttttttttttgatgaatgcCAAGGGTGTACATAGAGTAGAATGATGCAACTCTGTATGGCGGAATAACATTTcaaattcttttaaacttttacatGGATTTGTAAATAATGTAGATATAAATACTATTCAGATTTGTATTTCAAAGTATGATTAACATTATTTTGGTTTACTTCtattaaataaatctatcagtcatttctttataaattggtttataaattatgttttattttgtcataaCCTATATAAGCCTTTATACTGACTGTTTTATGATGTCAcaaccttcttttttttctcagattaaACCGGTTCAGTTGTGCGTCCTTGCattgtttgttttaatcaaacattaaatcaaattttCTGCTTA
>XM_026931396.2
GTAAGGTGAGATCGTTAAATGGAAACATTTAATCGCATTAGTTTCAGCTTTAGCAGTCTCCATGACAGTCACTGCGCAACAGACGGGTGTGTAAGTCACTTCATTCTGATTCCATGGAAAACAGAGGTGAATATGTAATGTTTTCAAAAGAGACGTGCCTGCTGGACACTGCATCAGAGAAACTGAGGAAAGAGCTGGAGGAAGAGCTGAAACTCAGCAGCCACAACATACAAAGTCATGGCTGGTACCATGGACGTATACCTTGGGAGGTTTCAGAGTCTCTGGTGCTACAGGATGGGGATTTCCTGATTCGCGATTCTTTGACCAGTTTGGGAGATTACGTCCTAACCTGCCGCTGGAATCAGAAACCTCTCCACTTCTTGATCAGCAAAGTTCTGCTGAGATCCAGTGACACATACACACGGATACAGTATGTTCTGGAAGGAGAGCAGTTTGACTCCATTCCAGCGTTGGTCCATTTCTATGTGGGCGGCCAGACGCCACTTACTCAACACAGCGGCGCACACGTGATTTCCCCAGTCAACAGAACTGTACCACTGCGCTCTCTGGAGACAATGTTTGGTCAGACTAGTAAGGAGGGGACACCATTAAACTCACCTGTGCACAGGAAGGGAAGTTTAGGAATGACAGAGGCTCTGGCATTTGAGTTAATAAACCCTCAGAGGGAGGCAGTCAAGAGCTTCGTTGGAAGCTTGGAACAGCGTGTTGTAGTGACGTCATccccaaccccactgaacacacTCTACGGACGTAGAAAAAGTCCATCACGCAATAGGAAGTTTGTTGTGGTCCCTTCATCGCCCGTTTTGCAAAGACCCGATGACATGCACCTTTGTACTTCTCCAACTGAGAGTGCTGTCATCTATTTGGAGCCTACAGACAACACATGGTCTCCCAGCACGGAGTCCTGTCAAAGCACTGCTGCAGACCCCAGTGACCTGCAATCCAGCACAGGCCTTTATCCACACAGCCTTGCTCGTATACAGTCACCCTTCAGTGGACAAGAGGACCAGACAGTGCAGGGCTTCATGGACGAGGACAATGAGGATTATTTAATGCCACTTGTAATTGAATCAGCCTCCAGTTTCAGACCCAGCACGTACCAGTCCCCGCTTCTACCCGCAGAAAATAAACCACTAGAAGCAAGAGTGTTAAGGAGAGCGAAGGAGGTGCTTATAGATGCTGATACAAAGACGATGGCCATGCACATCACCAAAATTGACTGCATGGTTGCTCGTATATTGGATTTATCCAGTGAGAATACAAGAGGGATGGCTGTGAGCTCGGGAATGGAGCTGCTCACACTTCCACATGGCCACCATCTCCGACAAGACCTGCTGGAAAGGTTCTATACCATGTCCATCATGCTGGCTATGGTGCTGTTGGGTTGCACGGGCAGTGTGGAGGAAAGAGGCTCCCTACTGCACAGAATTATCTCACTGGCATCTGAGCTGAAGACTAACCTGGGCAATATGTTTGGCTTTGCTGCAGTTATGAGAGTCCTAGAACTTCCACAGATTGTTCGGTTGGATGAGACGTGGATGGCTTTAAggcaaaaatacacagaaagtgCAGTTCTGTATGAGAAAACCTTGAGGCCCTCTTTGAAGAGAATGAATGATGGAAAAGAGCCCTGTGACCCATCGGAGATGACTGTCCCTCATGTGCTCCCTCTGCTGCTCCTGCTTGAGAAGAGTGCCGTGATTCTTGAAGGGTCTGAGTCCTGGGAGAGTCTCGACTCTGGAATGGACTCTTTGCTGTGTCATTTAAATGCTGCTCGTACCATTGCATGCCATGGAGAAACCTACTGTTCTAATGCCAAGGCAAAACTACAGGGTTTCCATGAGCAGCCAGACGTACTAGAAGTTTTCCTGACTGAGTTCCAGATGCGTCTGCTGTGGGGGAGCCGGGGAGCGGAGGCGAACAGGGAGGAGCGCTATGAGAAATTTGACAAAGTGCTAACAGCCCTGTCCAACAGACTGGAACCTTCTCAGCAGGCAGAATGATACACATTGCACATGTCTCACTCTGAAATgtgtatatatctttttttttttttttttttttgatgaatgcCAAGGGTGTACATAGAGTAGAATGATGCAACTCTGTATGGCGGAATAACATTTcaaattcttttaaacttttacatGGATTTGTAAATAATGTAGATATAAATACTATTCAGATTTGTATTTCAAAGTATGATTAACATTATTTTGGTTTACTTCtattaaataaatctatcagtcatttctttataaattggtttataaattatgttttattttgtcataaCCTATATAAGCCTTTATACTGACTGTTTTATGATGTCAcaaccttcttttttttctcagattaaACCGGTTCAGTTGTGCGTCCTTGCattgtttgttttaatcaaacattaaatcaaattttCTGCTTA

Function

symbol description
sh2d3c Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to be located in axon; cytoplasm; and ruffle membrane.

NR:

description
PREDICTED: SH2 domain-containing protein 3C

GO: NA

KEGG:

id description
K23690 SH2D3C; SH2 domain-containing protein 3C

RNA

RNA id representative length rna type GC content exon number start site end site
TU417115 False 540 lncRNA 0.31 1 8640942 8641481
XM_026931393.2 False 2487 mRNA 0.46 11 8641461 8651738
XM_026931394.2 True 2500 mRNA 0.45 11 8641461 8654612
XM_026931396.2 False 2449 mRNA 0.45 11 8641461 8651605

Neighbor

gene id symbol gene type direction distance location
tor2a tor2a coding downstream 197 8634520 ~ 8640745 (-)
LOC113537140 secisbp2 coding downstream 28322 8603201 ~ 8612620 (-)
emb emb coding downstream 72812 8561959 ~ 8568130 (-)
LOC113537023 LOC108255920,LOC108423573,LOC107703272,LOC107567144,LOC107699749 coding downstream 90972 8539235 ~ 8549970 (-)
LOC113537187 LOC108255404 coding downstream 113723 8519235 ~ 8527219 (-)
col27a1b col27a1,LOC108256032,LOC107699687 coding upstream 27520 8682132 ~ 8747709 (-)
LOC113536867 NA coding upstream 109604 8764216 ~ 8773109 (-)
LOC113536953 LOC108255390 coding upstream 247570 8902182 ~ 8907720 (-)
camsap1b camsap1 coding upstream 253184 8907796 ~ 8934237 (-)
notch1b notch1,LOC108255797,LOC107567148,LOC107720248,LOC107672539,LOC107699763 coding upstream 284639 8939251 ~ 8978655 (-)
G352036 NA non-coding downstream 11850 8628413 ~ 8629092 (-)
G352035 NA non-coding downstream 12621 8627430 ~ 8628321 (-)
G352011 NA non-coding downstream 88820 8551921 ~ 8552122 (-)
G352010 NA non-coding downstream 89158 8551580 ~ 8551784 (-)
G352009 NA non-coding downstream 89483 8551231 ~ 8551459 (-)
G352068 NA non-coding upstream 76471 8731083 ~ 8733868 (-)
LOC113536901 NA non-coding upstream 317020 8971632 ~ 8976888 (-)
G352491 NA non-coding upstream 527536 9182148 ~ 9184754 (-)
G352498 LOC108255998 non-coding upstream 542171 9196783 ~ 9200688 (-)
G352487 NA non-coding upstream 551816 9206428 ~ 9210530 (-)
malt1 malt1 other downstream 54931 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 84266 8553647 ~ 8556676 (-)
card9 card9 other downstream 1033476 7602907 ~ 7607466 (-)
ccdc180 ccdc180 other downstream 1042980 7585472 ~ 7597962 (-)
G350867 NA other downstream 1865793 6764914 ~ 6775149 (-)
LOC113536894 ttc16 other upstream 386015 9040627 ~ 9049408 (-)
LOC113536891 NA other upstream 1121354 9775966 ~ 9814416 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 1715550 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 1854459 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 2076915 10731527 ~ 10748838 (-)

Expression


Co-expression Network