G352869


Basic Information

Item Value
gene id G352869
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 10149257 ~ 10225339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU418081
CCACACTTTACTAAtggagaaaataataaattcaaagGCCATTTCAATTTTTGTGaggttttattttccatttcgAAACTTGATGTAAAAACAATACACTGTAtttaagttgaaaaaaaaaaaaaaaagaatgatgttttgtgcataaaAAGTAGCATTATTTGTCTGTATTGTAGCTTTGCAGTACAAAGAGGAATAATAGGTGGAGTTTTCTTCCCAATCACATAAACAAACCCACGTCTATAGAAATACAGAATATTACATCTGCTTTCAGTGGCAAGTCATTGTAGCTTATTCCATAAACATATGAGAAAttggtgttctttaataaacccAACCCAATGACACAATGTTTTGTTGGCACTCAATTATGCAAGTGCAAGGCTCAGATTAGTCATTTACGGTGCAGTCGCTAGTAAGCAACTGGGTCCTATTAAAGATTTCATGTGCCTCTGGGTCAAATGTAACTGCATGTGCAGCTTTCCGCAATGACCAAAAATGCATTGCGTCTCcagcagcttgtcatatttgtttttttagatAGAAATTGTATTAGCTGTGATATCATAAGATAGGACAAATTTGGTGCACGGGAAGAAAATATTTGAACAAAACTATTGCCTTAGCTCACCTTTTAGGCAAATGGTATTATCAATTATCTCCTTTAACAATAAAGACTAGGAAGAATGTGCTTCAGCACATATTACAGAACAAGGACATTATGTTCCATTTGTTTTCTggggaaaagagggaaaaatttTAGAAGCAGGAAGACTAATGGAAAGTATTTGTTACAAGTAGGTACCAAGGCTGCTGACACTCTGGGTCATAtacattcatttttacacacacacacacacacacacacacacacacacacagagaatgacacacatgcagattcattcattctcagaaaaacacagatttgCCATACCTGCTGTATATGCGTTGTTGGCAAGGCTCAGCCAGACTAACGCCAAGGGAATTATGGTTAtcatcttctttcttttttctttgtctttgggCCTGTGCACTAGAGAAACAAAAAAGGGGGATGTTGGCTCAAACTTAGGTAGACTACCCCTGGATACTGCCCAGAAAATTGTTCTGCTTTCTTCGTTGGTGTGAGGAGGTGTAGGCAGCAGACAGTTGAGGTGCCACTGAAAAGTTTGGGGTCCTC
>TU418083
CCACACTTTACTAAtggagaaaataataaattcaaagGCCATTTCAATTTTTGTGaggttttattttccatttcgAAACTTGATGTAAAAACAATACACTGTAtttaagttgaaaaaaaaaaaaaaaagaatgatgttttgtgcataaaAAGTAGCATTATTTGTCTGTATTGTAGCTTTGCAGTACAAAGAGGAATAATAGGTGGAGTTTTCTTCCCAATCACATAAACAAACCCACGTCTATAGAAATACAGAATATTACATCTGCTTTCAGTGGCAAGTCATTGTAGCTTATTCCATAAACATATGAGAAAttggtgttctttaataaacccAACCCAATGACACAATGTTTTGTTGGCACTCAATTATGCAAGTGCAAGGCTCAGATTAGTCATTTACGGTGCAGTCGCTAGTAAGCAACTGGGTCCTATTAAAGATTTCATGTGCCTCTGGGTCAAATGTAACTGCATGTGCAGCTTTCCGCAATGACCAAAAATGCATTGCGTCTCcagcagcttgtcatatttgtttttttagatAGAAATTGTATTAGCTGTGATATCATAAGATAGGACAAATTTGGTGCACGGGAAGAAAATATTTGAACAAAACTATTGCCTTAGCTCACCTTTTAGGCAAATGGTATTATCAATTATCTCCTTTAACAATAAAGACTAGGAAGAATGTGCTTCAGCACATATTACAGAACAAGGACATTATGTTCCATTTGTTTTCTggggaaaagagggaaaaatttTAGAAGCAGGAAGACTAATGGAAAGTATTTGTTACAAGTAGGTACCAAGGCTGCTGACACTCTGGGTCATAtacattcattttacatttcatgATATGATTCATGACATGCTTCATAgcgttacatttattttaaggatgtgtgtgtgtgtgtgtgtgtgtTAAAATGTGT
>TU418084
CCACACTTTACTAAtggagaaaataataaattcaaagGCCATTTCAATTTTTGTGaggttttattttccatttcgAAACTTGATGTAAAAACAATACACTGTAtttaagttgaaaaaaaaaaaaaaaagaatgatgttttgtgcataaaAAGTAGCATTATTTGTCTGTATTGTAGCTTTGCAGTACAAAGAGGAATAATAGGTGGAGTTTTCTTCCCAATCACATAAACAAACCCACGTCTATAGAAATACAGAATATTACATCTGCTTTCAGTGGCAAGTCATTGTAGCTTATTCCATAAACATATGAGAAAttggtgttctttaataaacccAACCCAATGACACAATGTTTTGTTGGCACTCAATTATGCAAGTGCAAGGCTCAGATTAGTCATTTACGGTGCAGTCGCTAGTAAGCAACTGGGTCCTATTAAAGATTTCATGTGCCTCTGGGTCAAATGTAACTGCATGTGCAGCTTTCCGCAATGACCAAAAATGCATTGCGTCTCcagcagcttgtcatatttgtttttttagatAGAAATTGTATTAGCTGTGATATCATAAGATAGGACAAATTTGGTGCACGGGAAGAAAATATTTGAACAAAACTATTGCCTTAGCTCACCTTTTAGGCAAATGGTATTATCAATTATCTCCTTTAACAATAAAGACTAGGAAGAATGTGCTTCAGCACATATTACAGAACAAGGACATTATGTTCCATTTGTTTTCTggggaaaagagggaaaaatttTAGAAGCAGGAAGACTAATGGAAAGTATTTGTTACAAGTAGGTACCAAGGCTGCTGACACTCTGGGTCATAtacattcattttacatttcatgATATGATTCATGACATGCTTCATAgcgttacatttattttaaggatgtgtgtgtgtgtgtgtgtgtgtttatgtataaat
>TU418085
CCACACTTTACTAAtggagaaaataataaattcaaagGCCATTTCAATTTTTGTGaggttttattttccatttcgAAACTTGATGTAAAAACAATACACTGTAtttaagttgaaaaaaaaaaaaaaaagaatgatgttttgtgcataaaAAGTAGCATTATTTGTCTGTATTGTAGCTTTGCAGTACAAAGAGGAATAATAGGTGGAGTTTTCTTCCCAATCACATAAACAAACCCACGTCTATAGAAATACAGAATATTACATCTGCTTTCAGTGGCAAGTCATTGTAGCTTATTCCATAAACATATGAGAAAttggtgttctttaataaacccAACCCAATGACACAATGTTTTGTTGGCACTCAATTATGCAAGTGCAAGGCTCAGATTAGTCATTTACGGTGCAGTCGCTAGTAAGCAACTGGGTCCTATTAAAGATTTCATGTGCCTCTGGGTCAAATGTAACTGCATGTGCAGCTTTCCGCAATGACCAAAAATGCATTGCGTCTCcagcagcttgtcatatttgtttttttagatAGAAATTGTATTAGCTGTGATATCATAAGATAGGACAAATTTGGTGCACGGGAAGAAAATATTTGAACAAAACTATTGCCTTAGCTCACCTTTTAGGCAAATGGTATTATCAATTATCTCCTTTAACAATAAAGACTAGGAAGAATGTGCTTCAGCACATATTACAGAACAAGGACATTATGTTCCATTTGTTTTCTggggaaaagagggaaaaatttTAGAAGCAGGAAGACTAATGGAAAGTATTTGTTACAAGTAGGTACCAAGGCTGCTGACACTCTGGGTCATAtacattcattttacatttcatgATATGATTCATGACATGCTTCATAgcgttacatttattttaaggatgtgtgtgtgtgtgtgtgtgtgtgggtggggtA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU418081 True 1183 lncRNA 0.38 2 10217824 10225339
TU418083 False 931 lncRNA 0.34 2 10169498 10225339
TU418084 False 933 lncRNA 0.34 2 10149257 10225339
TU418085 False 931 lncRNA 0.35 2 10178689 10225339

Neighbor

gene id symbol gene type direction distance location
rasa1a rasa1,LOC108443998,LOC106580138 coding downstream 381788 9739011 ~ 9767469 (-)
LOC113536918 LOC108255830 coding downstream 420808 9726395 ~ 9728449 (-)
polr3g polr3g,LOC107557435 coding downstream 776638 9369976 ~ 9372619 (-)
adgrv1 adgrv1 coding downstream 788376 9229961 ~ 9360881 (-)
pmpca pmpca coding downstream 972795 9169861 ~ 9176462 (-)
vcana vcan coding upstream 12297 10237636 ~ 10269049 (-)
zgc:110626 LOC108255345 coding upstream 108087 10333426 ~ 10339194 (-)
f2r f2r coding upstream 142056 10367395 ~ 10369658 (-)
sv2ca sv2c,LOC107755746,LOC107748435,LOC107565680 coding upstream 193187 10418526 ~ 10449587 (-)
ankdd1b ankdd1b coding upstream 237273 10462612 ~ 10470825 (-)
G352610 NA non-coding downstream 467459 9681029 ~ 9681798 (-)
LOC117595977 NA non-coding downstream 542283 9603400 ~ 9606974 (-)
G352512 NA non-coding downstream 816286 9332766 ~ 9332971 (-)
G352487 NA non-coding downstream 938727 9206428 ~ 9210530 (-)
G352498 LOC108255998 non-coding downstream 948569 9196783 ~ 9200688 (-)
G352878 NA non-coding upstream 11545 10236884 ~ 10237277 (-)
G352881 NA non-coding upstream 83946 10309285 ~ 10309632 (-)
G352883 NA non-coding upstream 87248 10312587 ~ 10313356 (-)
G353075 NA non-coding upstream 206688 10432027 ~ 10588716 (-)
G353070 NA non-coding upstream 357486 10582825 ~ 10586818 (-)
LOC113536891 NA other downstream 334841 9775966 ~ 9814416 (-)
LOC113536894 ttc16 other downstream 1099849 9040627 ~ 9049408 (-)
sh2d3cb sh2d3c other downstream 1494645 8640942 ~ 8654612 (-)
malt1 malt1 other downstream 1563246 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 1592581 8553647 ~ 8556676 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 144823 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 283732 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 506188 10731527 ~ 10748838 (-)
mrpl41 mrpl41 other upstream 3496766 13722105 ~ 13724858 (-)
ccl19a.2 NA other upstream 4683457 14908796 ~ 14924659 (-)

Expression


Co-expression Network