G355377 (LOC108255875)


Basic Information

Item Value
gene id G355377
gene name LOC108255875
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14629776 ~ 14706921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU421010
GGGCAAGGAGAGatgtcctatttttttttatcttattaaggCATTTTGTGAACAAATTTAATCACACATATGTCAGTGGGAGCCATATTGACAGATAcacttcattaaaatgaaatataagcTGCAAGATTTAAAATAGCGAGCAGGAGAGTCGGATCATCATGCATGGGTTCTGTGGTTGGTTTGGTTTCCTGAATGGAGTCGCTGAAAAGTCCGAAGTCAGAACAGTTCGTGATAATCTCCATAACGTCCTCATCGTGTCAAACGTTTCCTTCAGTTACTGTTTCTCAGTGTTTCACATTTTTAGCTGAAACCATGCTGTAGAGATCATAAATATCTTTGATTTGGTGAAACTGATGTACAATCTTTTACTGATTCCGACTCTTCTCAAAGAAGGGCATTATCCATTACTATATGTGTGAGAGCTTAGATTTCAGGTTATCAACTGTGCTATTGAGTTTTAGTGTATTTGTGATTGTAGTCTATACACTGCTACCATGAaacattcacatttcacataCAATCTAagcagcaatgtttttttttttcttcccattaCACAACTGTGACTGTAAAATCAAACATATTTCACTGAAGAGCCTGGCATGGCCAAATCTGAGGCACTACCTGTTTACAGGATGAACAGCAGTGGAGTTTGTGTTGCGTGATGACTCAGGCTGAGCagcgggggaaaaaaaaaggactacACGGATTTACACCTTCCATGCTTCTGAGTTGGCATTGAAGTGTAACGCTAAGAGAAGTATTGCACTAGTGTCTGGGATTTATAAACCCAGTATTAAagtgaattaataaaaataaattctatatCGTTTAACACTTGCTTCATCTTTTCCTTCTACCCAAAGCAAGGTTATGACATCATCACGCACACACATCATCTGTCCCACTTATCTTTcatagctgctttttttttttttttttttttttgtgatattatAACCAGTGATTGCTCTTCGTGCGGCTGAATTTGTTTCATGAACGCTTGCATTTTGATTAAACTATACTGCGAGGGTAAGAACACTGCCCacttc
>TU421012
tgcttttttttttttctgcttttttttttgcgtttcTTTCACAGTTGTGTATTACTATTCGAGCTTGATTTGTTGATGATgcacaaaatatttacagtgcTTGATTCGTAGGAGAGCAAAGAAATAACAAATTGCTATGAGACAAAATTGCTTAATGATATTTCCATGTCATTTGTCTAAATACAACTCACGAAGACCCTTTGGCTTGGACAAATGTATACGAGCCCATGAACTAACTGGGAAGTTACAAAAGCAAACACAGCAATGAAAGCAATACGTGTTCTAGTTAATACGATAAGGGCGAAAACACAATCCACACACAACATAACCACCACTGCAGCGTGCTTTACACACATCTGAAGCTGAAATGTCTATCAAACAATCCAATACAGGGATAAACCCAAATTGAAACGATAACAAATGTCTCAAGTGTACTTTTTATGCGACAGCAAAGTGCTCTTATTTCACACCACGGTGGTTACAAGACTCTTTAAGAGTGGATGGATTGGTTAAAGCTACAATCAGTATGTTTTAGGTTCGAGTTTAATGAAATCTGAAGAACTGTGAGCGCAGcccaaaaaacaaacacgaCCCCTAAAACATAGTGATCCTATAGCTTTAAGCCCTCGGTAATATACAcgtctctctttttttggctgttttgtaATACAgtagagtttttaaaaaaattttgctAAAACAATGCAGTCtactctttttaaaattaagagGGCTGCAGAggtcaaaacattttttttttaatcattctgtctAGTGTTGCAAGCAAATCTACAGCAGCAGTCCCGCTAACTCCACCTTCCCAGCTCCTTTATGTCTTCTCCTGGTGGGTCTCATTGTAATCCATGATGTGCAGGTCCTGCTGTTTGCGCCTCTGGATGTTGTAAGCGCGGGCCCTGTGCCGATCCACAGGCGGGAAGTCGGGCTCTTCCTCTGCCAGCCTCTGGGACCCTGTGAGCTCAGTGCGTTTCTCAGCAGCTTCTGAGCTCTGGTCATGAAGCCGGTGGGCGTGCTCCTCCACATACGGACTCTTTGTCTTCTTCAGCAGCTCTTGGTTGTGCATTCCCAAGAAGCTCTGAGCTGAAGGAGAGTTGCAGGACAGAACAGAAAGGTCTTCTTCCTGACTGCCGTTGATCAGTGCAGTGGATGGTGGGGATCCGGGAGACAGCGGTGAGAGCTCGCCGTTCACACACAAATAAGAAGTTTCCTCTCTTTTCCCTGACTCGGAGGTTTGAGCTGAAGTGGATGTGTTGCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421010 False 1055 lncRNA 0.38 2 14629776 14647504
TU421012 True 1276 lncRNA 0.43 2 14645320 14706921

Neighbor

gene id symbol gene type direction distance location
grin1b grin1,grin1b,LOC107681230,LOC107709703,LOC107757976,LOC107597863,LOC105891600 coding downstream 4732 14595957 ~ 14625044 (-)
LOC113536885 entpd2 coding downstream 43772 14568937 ~ 14586004 (-)
nelfb nelfb,LOC107709698,LOC107566125,LOC107690668,LOC107681244,LOC107757973,LOC107587325 coding downstream 60997 14559046 ~ 14568779 (-)
LOC113537139 LOC108255887 coding downstream 74143 14553257 ~ 14555633 (-)
LOC113537144 NA coding downstream 78125 14550084 ~ 14551651 (-)
LOC113537011 H2AFV,LOC106584895,LOC107386217,LOC105007341,LOC107668744 coding upstream 66209 14773130 ~ 14777805 (-)
LOC113537164 NA coding upstream 95597 14802518 ~ 14805253 (-)
ckap2l LOC108255521 coding upstream 100952 14807873 ~ 14825591 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding upstream 122284 14829205 ~ 14862572 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding upstream 159243 14866164 ~ 14886061 (-)
G355375 NA non-coding downstream 32330 14597153 ~ 14597446 (-)
G354930 NA non-coding downstream 453570 14175918 ~ 14176206 (-)
G354893 trafd1 non-coding downstream 548380 14067786 ~ 14081396 (-)
G354722 NA non-coding downstream 877954 13749877 ~ 13751822 (-)
G354640 NA non-coding downstream 956806 13574531 ~ 13672970 (-)
G355413 NA non-coding upstream 24390 14731311 ~ 14745946 (-)
G355434 purb,purba,LOC108425219 non-coding upstream 71899 14778820 ~ 14781523 (-)
G355456 NA non-coding upstream 100130 14807051 ~ 14807352 (-)
G355724 NA non-coding upstream 241033 14947954 ~ 14949438 (-)
G355732 NA non-coding upstream 242614 14949535 ~ 15026316 (-)
mrpl41 mrpl41 other downstream 904918 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 3880938 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4112571 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4218090 10370162 ~ 10411686 (-)
LOC113536891 NA other downstream 4815360 9775966 ~ 9814416 (-)
ccl19a.2 NA other upstream 201875 14908796 ~ 14924659 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 873549 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 1126132 15833053 ~ 15841684 (-)
G356331 NA other upstream 1432868 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1707768 16414689 ~ 16442957 (-)

Expression


Co-expression Network