Item | Value |
---|---|
gene id | G355434 |
gene name | purb,purba,LOC108425219 |
gene type | non-coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047618.1 |
NCBI id | CM018564.1 |
chromosome length | 20251756 |
location | 14778820 ~ 14781523 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
purba | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURB (purine rich element binding protein B). |
purb | Enables RNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleoplasm. |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU421077 | True | 2704 | lncRNA | 0.44 | 1 | 14778820 | 14781523 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC113537011 | H2AFV,LOC106584895,LOC107386217,LOC105007341,LOC107668744 | coding | downstream | 1015 | 14773130 ~ 14777805 (-) |
cfap77 | cfap77 | coding | downstream | 56122 | 14705927 ~ 14722698 (-) |
barhl1a | LOC108256006,LOC100049373 | coding | downstream | 73743 | 14701210 ~ 14705077 (-) |
spaca9 | NA | coding | downstream | 126777 | 14647609 ~ 14652043 (-) |
grin1b | grin1,grin1b,LOC107681230,LOC107709703,LOC107757976,LOC107597863,LOC105891600 | coding | downstream | 153776 | 14595957 ~ 14625044 (-) |
LOC113537164 | NA | coding | upstream | 20995 | 14802518 ~ 14805253 (-) |
ckap2l | LOC108255521 | coding | upstream | 26350 | 14807873 ~ 14825591 (-) |
LOC113537027 | cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 | coding | upstream | 47682 | 14829205 ~ 14862572 (-) |
sec14l8 | sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 | coding | upstream | 84641 | 14866164 ~ 14886061 (-) |
tctn2 | tctn2 | coding | upstream | 106859 | 14888382 ~ 14903274 (-) |
G355413 | NA | non-coding | downstream | 32874 | 14731311 ~ 14745946 (-) |
G355377 | LOC108255875 | non-coding | downstream | 71899 | 14629776 ~ 14706921 (-) |
G355375 | NA | non-coding | downstream | 181374 | 14597153 ~ 14597446 (-) |
G354930 | NA | non-coding | downstream | 602614 | 14175918 ~ 14176206 (-) |
G354893 | trafd1 | non-coding | downstream | 697424 | 14067786 ~ 14081396 (-) |
G355456 | NA | non-coding | upstream | 25528 | 14807051 ~ 14807352 (-) |
G355724 | NA | non-coding | upstream | 166431 | 14947954 ~ 14949438 (-) |
G355732 | NA | non-coding | upstream | 168012 | 14949535 ~ 15026316 (-) |
G355725 | NA | non-coding | upstream | 171693 | 14953216 ~ 14954814 (-) |
LOC117595933 | NA | non-coding | upstream | 187835 | 14969358 ~ 14971217 (-) |
mrpl41 | mrpl41 | other | downstream | 1053962 | 13722105 ~ 13724858 (-) |
LOC113536823 | NA | other | downstream | 4029982 | 10731527 ~ 10748838 (-) |
LOC113536921 | LOC108255872 | other | downstream | 4261615 | 10509071 ~ 10517205 (-) |
iqgap2 | iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 | other | downstream | 4367134 | 10370162 ~ 10411686 (-) |
LOC113536891 | NA | other | downstream | 4964404 | 9775966 ~ 9814416 (-) |
ccl19a.2 | NA | other | upstream | 127273 | 14908796 ~ 14924659 (-) |
spring1 | c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 | other | upstream | 798947 | 15580470 ~ 15589491 (-) |
selenoe | LOC108255849,LOC100703742,LOC101466006,LOC102210357 | other | upstream | 1051530 | 15833053 ~ 15841684 (-) |
G356331 | NA | other | upstream | 1358266 | 16139789 ~ 16140270 (-) |
rabl6b | rabl6,rabl6b,LOC108435365 | other | upstream | 1633166 | 16414689 ~ 16442957 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
zebrafish (Danio rerio) | XLOC_030898 | purba | coding | NC_007116.7 | CM002889.2 | 13643167 ~ 13646054 (-) |