G355456


Basic Information

Item Value
gene id G355456
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14807051 ~ 14807352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU421111
aactggcCACTTTAGTTGAGTCTGAGTCTGAGTCTGAgttcccactgtagcctcagattcctgttcctggctgacaggagtggaacctggtATGATACTtaacattctgagatgcttttctgctcaccgtggttgtaaagaatTATTTGATGACTGTagtctttctgtcagcttgaaccaatctgacCATCCTGCTCTGACCTCTCCCATCAACAAAGCGTTTCCGCACACAGAGCTGCCACTCGCttgatggtttttgtttttttgcaccatttttgtatactaaaatactaaaacCGGGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021532 neural tube patterning biological_process
GO:0007498 mesoderm development biological_process
GO:0035295 tube development biological_process
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0032502 developmental process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421111 True 302 lncRNA 0.44 1 14807051 14807352

Neighbor

gene id symbol gene type direction distance location
LOC113537164 NA coding downstream 1798 14802518 ~ 14805253 (-)
LOC113537011 H2AFV,LOC106584895,LOC107386217,LOC105007341,LOC107668744 coding downstream 29246 14773130 ~ 14777805 (-)
cfap77 cfap77 coding downstream 84353 14705927 ~ 14722698 (-)
barhl1a LOC108256006,LOC100049373 coding downstream 101974 14701210 ~ 14705077 (-)
spaca9 NA coding downstream 155008 14647609 ~ 14652043 (-)
ckap2l LOC108255521 coding upstream 521 14807873 ~ 14825591 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding upstream 21853 14829205 ~ 14862572 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding upstream 58812 14866164 ~ 14886061 (-)
tctn2 tctn2 coding upstream 81030 14888382 ~ 14903274 (-)
ccl19a.1 NA coding upstream 96855 14904207 ~ 14906000 (-)
G355434 purb,purba,LOC108425219 non-coding downstream 25528 14778820 ~ 14781523 (-)
G355413 NA non-coding downstream 61105 14731311 ~ 14745946 (-)
G355377 LOC108255875 non-coding downstream 100130 14629776 ~ 14706921 (-)
G355375 NA non-coding downstream 209605 14597153 ~ 14597446 (-)
G354930 NA non-coding downstream 630845 14175918 ~ 14176206 (-)
G355724 NA non-coding upstream 140602 14947954 ~ 14949438 (-)
G355732 NA non-coding upstream 142183 14949535 ~ 15026316 (-)
G355725 NA non-coding upstream 145864 14953216 ~ 14954814 (-)
LOC117595933 NA non-coding upstream 162006 14969358 ~ 14971217 (-)
G355726 NA non-coding upstream 234953 15042305 ~ 15074193 (-)
mrpl41 mrpl41 other downstream 1082193 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4058213 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4289846 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4395365 10370162 ~ 10411686 (-)
LOC113536891 NA other downstream 4992635 9775966 ~ 9814416 (-)
ccl19a.2 NA other upstream 101444 14908796 ~ 14924659 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 773118 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 1025701 15833053 ~ 15841684 (-)
G356331 NA other upstream 1332437 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1607337 16414689 ~ 16442957 (-)

Expression


Co-expression Network