ccl19a.2


Basic Information

Item Value
gene id ccl19a.2
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14908796 ~ 14924659 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU421429
aaaaaaaaaaaagacatttatttagttaaCAATGAGGCGGTGCTGTCTATTTTCACCCACAAAACCCGGCTTCTGTAATAAAGCTAACCGAGACTCGCCGGCTACAGCCTAAACCGCATACTAccgtactaaatagtatgtcaaaACGTTACACCGCCGCTGCTTGCGTACTATTCTTTACACACTATGTAGTATAGTAGTAGGCTGTTTCGGACCTAGCTACCGTCTAACTTTAAACGAAACTTAACCACAAACGAATGTGGATGAACTGATTACTCATTCAGTTCCAGTAATAatcgatttttaaaaaaaaatcctcattcGGCCGTCGACCACAAAAGcgatataaaaacaaaaaaacagggaaATAAAGAGATTCTACCTTGTGCAGTCTCCTGCTCGCCGCCATCTTGAATCATTGGACAACTCCCAGAATGCACCGCGGCAAGAGGTTCAGCAGGTGTATAAATAATGCCATGTGATGGTACCTGTGCACACACCTGGGGAACATTGCATCTGATGCTCAGAAAGCTGCAGAACACAGACGCAAGCATGCTGAATTCAGTAGTTGCTCTTCTGGCCTTCACTGCACTTCTGTGGAACAATGCACAAGCATTCTCCAGTAACGCTGATGACTGCTGTCTGTCCACCAGTGATACTTTAGTTCCACGCCGCATTGTAGAATCCTACATCATCCAAAATGCAGACAGTGGATGCTCCATTCCAGCTACTGTGTTCATcacaaagaagaacaagaagctGTGCTCTCCACCTGCAAGTGACACGAGATATCCATGGGTGTTGAAGCTCATTGAATATATGGGCAATCGTAGCAGCAAGAGAAAAGgccCTCAGTGATAAACAGGGTGAATATGTCTAGGCCTGTCGGATCATCATGCCTGGATTTTCTGTGACAGCATTTGTGATGTTAATAAGCTACTTTGCCTTtgtatctgtgtttttttttttcatcttgttTGAACATTTCAAAAATCACACACGTGCTCTTGTATTATGCTTCTCAtacaaaaaatgaacaaacataaAATGTGCCAGGGACCATGTGTGAATCTGTGTGCACTTGTGTCAACACGTTGTGTTTTATACACACTAAATCTACTGatgaattgtattttttttttccttatgaaTATGTGCATAGCTTTTTTAAGAGGAGTGAATTcaaataaaactcattttagtaaataaaa
>XM_026931500.2
ATGGTACCTGTGCACACACCTGGGGAACATTGCATCTGATGCTCAGAAAGCTGCAGAACACAGACGCAAGCATGCTGAATTCAGTAGTTGCTCTTCTGGCCTTCACTGCACTTCTGTGGAACAATGCACAAGCATTCTCCAGTAACGCTGATGACTGCTGTCTGTCCACCAGTGATACTTTAGTTCCACGCCGCATTGTAGAATCCTACATCATCCAAAATGCAGACAGTGGATGCTCCATTCCAGCTACTGTGTTCATcacaaagaagaacaagaagctGTGCTCTCCACCTGCAAGTGACACGAGATATCCATGGGTGTTGAAGCTCATTGAATATATGGGCAATCGTAGCAGCAAGAGAAAAGgccCTCAGTGATAAACAGGGTGAATATGTCTAGGCCTGTCGGATCATCATGCCTGGATTTTCTGTGACAGCATTTGTGATGTTAATAAGCTACTTTGCCTTtgtatctgtgtttttttttttcatcttgttTGAACATTTCAAAAATCACACACGTGCTCTTGTATTATGCTTCTCAtacaaaaaatgaacaaacataaAATGTGCCAGGGACCATGTGTGAATCTGTGTGCACTTGTGTCAACACGTTGTGTTTTATACACACTAAATCTACTGatgaattgtattttttttttccttatgaaTATGTGCATAGCTTTTTTAAGAGGAGTGAATTcaaataaaactcattttagtaaataaaa

Function

NR:

description
C-C motif chemokine 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421429 True 1211 TUCP 0.41 5 14908796 14924659
XM_026931500.2 False 730 mRNA 0.40 4 14908796 14910220

Neighbor

gene id symbol gene type direction distance location
ccl19a.1 NA coding downstream 2796 14904207 ~ 14906000 (-)
tctn2 tctn2 coding downstream 5522 14888382 ~ 14903274 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding downstream 22735 14866164 ~ 14886061 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding downstream 46224 14829205 ~ 14862572 (-)
ckap2l LOC108255521 coding downstream 83205 14807873 ~ 14825591 (-)
ydjc ydjc coding upstream 7154 14931813 ~ 14937772 (-)
ppil2 ppil2 coding upstream 173895 15098554 ~ 15141215 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding upstream 219526 15144185 ~ 15158018 (-)
pes pes1 coding upstream 237364 15162023 ~ 15177372 (-)
pole pole,LOC107668756 coding upstream 267999 15192658 ~ 15225173 (-)
G355456 NA non-coding downstream 101444 14807051 ~ 14807352 (-)
G355434 purb,purba,LOC108425219 non-coding downstream 127273 14778820 ~ 14781523 (-)
G355413 NA non-coding downstream 162850 14731311 ~ 14745946 (-)
G355377 LOC108255875 non-coding downstream 201875 14629776 ~ 14706921 (-)
G355375 NA non-coding downstream 311350 14597153 ~ 14597446 (-)
G355724 NA non-coding upstream 23295 14947954 ~ 14949438 (-)
G355732 NA non-coding upstream 24876 14949535 ~ 15026316 (-)
G355725 NA non-coding upstream 28557 14953216 ~ 14954814 (-)
LOC117595933 NA non-coding upstream 44699 14969358 ~ 14971217 (-)
G355726 NA non-coding upstream 117646 15042305 ~ 15074193 (-)
mrpl41 mrpl41 other downstream 1183938 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4159958 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4391591 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4497110 10370162 ~ 10411686 (-)
LOC113536891 NA other downstream 5094380 9775966 ~ 9814416 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 655811 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 908394 15833053 ~ 15841684 (-)
G356331 NA other upstream 1215130 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1490030 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 1539768 16464427 ~ 16478840 (-)

Expression


Co-expression Network