G355725


Basic Information

Item Value
gene id G355725
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 14953216 ~ 14954814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU421442
ACAAGAAACACTCCAGCCTTACCATTCTAGTTAAACGTGTCCAAACTCCTTTTTAGAAATTACTCTTATTCTTAGAAATTGGTTTGGATAGAATAGATTTGGATACACAGTCTCATTCTCtttatattgttttctttagtGACagtctttattaaaataaaataaagtaggcATCATTTGTAACATTTGCTCgcctattattatttttttttaatgtttattgccTCTAAAACAATCATGATCTTAATCTTTTATCATAATCCTCCTTGTTTTAAAGgtacatatataataatttacGCCTAGAATTTGTTTTCTGGTGGCACCaatgatttaatattaatgcacgtTCTTGTGTACacaataatgtatataaaatgcagTTATAACCTCAGTGTAAATTACATGCATTAATGTAAGTGAGTTAAGTCAGTAACATACAAGTTACGTTTATTTTGATCATCAGTTTTCACTTTATAGTCTGAAATATCTACAGTAAGCTAGTTTAGGGTAGAAATAACGTAAAGGTGCAGTCTGGAGCACTCTGGTTGTAGCCTGAACTACTCATTAGAAAGTGCTAAAGTCTTTTGCTTTGACGATGTTGCACTACTGAACCATCTAATCAAGCAGTGCAATAGTATTGTCATTGCATTCGGCTTTCGCCAACTCGTATGGCGTTACACGGACCTAAGAATTTGCTTGAGCACCAAGGCAGGAGTAGGCCATGTGCTGTTTAATATGGACACGCTCAGTCAGACCCTtaaggggatttttttttctgtaacacgAGAGGGCCATAACAGTAGTCTTTACACTGACTCCAGACCTTCATAGTATAACTCcagtgtaataaatatgaccCAGACCGTGCTAAGTGTACTACAGATATACAGAGGCAGTCTGGAGCCAACCTAAAGTCCATGTGTCCTAAATACGTATTACTGTAAACGCACACTGCGGGTTTGGAGAGCGTGAAAAGTCCATTCACGTGTCCCTCACACTAGTGGTGGGCGACATCATTACCACCATAAATTAGCCCACGTCACGATACGATTTTCTGATCATTACCACGATAAATTAGCCTACGTCACAATccattttttctaaataattgGCATGATAATTTAGCCCACGTCACGATATGATTTTCTGATCATTATCACGATAAATTAGCCTACGTCACAATCCATTTTTCTAAAAATTGGCACTATAATTTAGCCCATGTCACGATATTATTTTTTCTGATCGTTACCACGATAAACTAGCCTACGTCACAATCCATTTCTCTGATAATTGCCTAGCTAAATTAGCCTACGTCGCGATATGATTTTCTGATTATTACCACGATAAATTTGCCTGCATCACGAtacccttttttttctattgttgaTATAGTTATTAGACTTCTGGTGGACTGACCTGTGATAAAGAGCTTATTAATTAGGCTCTCAGTTGTTTTCTGTATAACCTATGATGTCGTAATGTCATCATAAAATTCACATATTAACCTTTGTGTTCTATTACTTGGCAAAGCTGCGTCCCATTGGCCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421442 True 1549 lncRNA 0.36 2 14953216 14954814

Neighbor

gene id symbol gene type direction distance location
ydjc ydjc coding downstream 15444 14931813 ~ 14937772 (-)
ccl19a.1 NA coding downstream 47216 14904207 ~ 14906000 (-)
tctn2 tctn2 coding downstream 49942 14888382 ~ 14903274 (-)
sec14l8 sec14l8,LOC108255515,LOC108431737,LOC107755846,LOC107599607,LOC107668747,LOC108431738 coding downstream 67155 14866164 ~ 14886061 (-)
LOC113537027 cnnm4,LOC108431740,LOC100150651,LOC107599606,LOC107668749 coding downstream 90644 14829205 ~ 14862572 (-)
ppil2 ppil2 coding upstream 143740 15098554 ~ 15141215 (-)
gal3st1a gal3st1,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding upstream 189371 15144185 ~ 15158018 (-)
pes pes1 coding upstream 207209 15162023 ~ 15177372 (-)
pole pole,LOC107668756 coding upstream 237844 15192658 ~ 15225173 (-)
si:dkey-98f17.5 si:dkey-98f17.5,LOC108255717,LOC108431725,LOC107755832,LOC107668759,LOC107599615,LOC106580116 coding upstream 336185 15290999 ~ 15311616 (-)
G355724 NA non-coding downstream 3778 14947954 ~ 14949438 (-)
G355456 NA non-coding downstream 145864 14807051 ~ 14807352 (-)
G355434 purb,purba,LOC108425219 non-coding downstream 171693 14778820 ~ 14781523 (-)
G355413 NA non-coding downstream 207270 14731311 ~ 14745946 (-)
G355377 LOC108255875 non-coding downstream 246295 14629776 ~ 14706921 (-)
LOC117595933 NA non-coding upstream 14544 14969358 ~ 14971217 (-)
G355726 NA non-coding upstream 87491 15042305 ~ 15074193 (-)
G355728 NA non-coding upstream 94636 15049450 ~ 15055786 (-)
G355848 NA non-coding upstream 369673 15324487 ~ 15380675 (-)
G355916 NA non-coding upstream 565261 15520075 ~ 15523463 (-)
ccl19a.2 NA other downstream 28557 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 1228358 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 4204378 10731527 ~ 10748838 (-)
LOC113536921 LOC108255872 other downstream 4436011 10509071 ~ 10517205 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other downstream 4541530 10370162 ~ 10411686 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other upstream 625656 15580470 ~ 15589491 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other upstream 878239 15833053 ~ 15841684 (-)
G356331 NA other upstream 1184975 16139789 ~ 16140270 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 1459875 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 1509613 16464427 ~ 16478840 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029921 dre-mir-301b non-coding NC_007116.7 CM002889.2 13289353 ~ 13289433 (+)
eurasian perch (Perca fluviatilis) G35789 NA non-coding NC_053115.1 CM020912.1 3864156 ~ 3865329 (-)
tiger barb (Puntius tetrazona) G32540 NA non-coding NC_056703.1 CM032072.1 1762005 ~ 1762282 (+)